updates bootrstrapann

containers/bootstrapann/Dockerfile

@@ -1,30 +1,30 @@
 ################## BASE IMAGE ######################
 
-FROM clinicalgenomics/mip_base:2.1
+FROM python:2.7-slim
 
 ################## METADATA ######################
 
-LABEL base_image="clinicalgenomics/mip_base:2.1"
-LABEL version="1"
+LABEL base_image="python:2.7-slim"
+LABEL version="2"
 LABEL software="BootstrapAnn"
-LABEL software.version="df02f35"
+LABEL software.version="ebc81ed"
 LABEL extra.binaries="BootstrapAnn.py"
 LABEL maintainer="Clinical-Genomics/MIP"
 
-RUN conda install pip python=2.7 numpy scipy
+RUN apt-get update && apt-get install -y git
+RUN apt-get clean && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
-## Clean up after conda
-RUN /opt/conda/bin/conda clean -tipsy
+RUN pip install numpy scipy
 
 ## Clone git repository
-RUN git clone https://github.com/J35P312/BootstrapAnn.git /opt/conda/share/BootstrapAnn
+RUN git clone https://github.com/J35P312/BootstrapAnn.git /usr/local/BootstrapAnn
 
-RUN cd /opt/conda/share/BootstrapAnn && git checkout df02f35
+RUN cd /usr/local/BootstrapAnn && git checkout ebc81ed
 
-## Move to smn_caller directory
-RUN cd /opt/conda/share/BootstrapAnn && \
+RUN cd /usr/local/BootstrapAnn && \
     chmod a+x BootstrapAnn.py
 
-RUN ln --symbolic --force /opt/conda/share/BootstrapAnn/BootstrapAnn.py /opt/conda/bin/BootstrapAnn.py
+RUN ln --symbolic --force /usr/local/BootstrapAnn/BootstrapAnn.py /usr/local/bin/BootstrapAnn.py
 
 WORKDIR /data/

templates/mip_install_config.yaml

@@ -16,7 +16,7 @@ container:
   bootstrapann:
     executable:
       BootstrapAnn.py:
-    uri: docker.io/clinicalgenomics/bootstrapann:df02f35
+    uri: docker.io/clinicalgenomics/bootstrapann:ebc81ed
   bwa:
     executable:
       bwa: