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Update lib/MIP/Qcc_regexp.pm
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Co-authored-by: Peter Pruisscher <57712924+peterpru@users.noreply.github.com>
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jemten and peterpru committed Feb 21, 2024
1 parent 797baf1 commit dc66fad
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion lib/MIP/Qcc_regexp.pm
Expand Up @@ -212,7 +212,7 @@ q?perl -nae 'my @sexCheckFactor; if ($. > 1) {my @temp = split(/\s+/,$_);push(@s
# Get entire sample relation check file
$regexp{relation_check}{sample_relation_check} = q?perl -nae 'print $_;' ?;

# Return FAIL if peddy has detected realtionship error
# Return FAIL if peddy has detected relationship error
$regexp{ped_check}{peddy_kinship} =
q?perl -F, -ne 'BEGIN {my @ped_checks;} next if $. == 1; push @ped_checks, $F[12]; END{ if ( grep $_ eq q{True}, @ped_checks ) { print q{FAIL}; } else { print q{PASS};} }' ?;

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