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adds automatic ped_check fail #2066

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merged 5 commits into from Feb 21, 2024
Merged

adds automatic ped_check fail #2066

merged 5 commits into from Feb 21, 2024

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jemten
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@jemten jemten commented Feb 20, 2024 •
edited

This PR adds | fixes:

  • Capture the results from the peddy's pedigree check and fail analysis in case of mismatch with given pedigree.
  • capture the results from peddy's sex check and automatically fail an analysis in the case of gender errors

How to test:

  • Automatic and continuous test suite

Expected outcome:

  • Installation, unit and integration test suite pass

Review:

  • Code review
  • Tests pass

This version is a:

  • MAJOR - when you make incompatible API changes. If applicable record manual test results in PR header
  • MINOR - when you add functionality in a backwards compatible manner. If applicable record manual test results in PR header
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

@jemten jemten marked this pull request as ready for review February 20, 2024 10:23
@jemten jemten linked an issue Feb 20, 2024 that may be closed by this pull request
Fail analysis on error in Peddy #2059
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@jemten jemten marked this pull request as draft February 20, 2024 13:53
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jemten commented Feb 20, 2024

adding peddy sex check to this PR as well, see issue #2068

@jemten jemten linked an issue Feb 20, 2024 that may be closed by this pull request
Fail analysis for mismatch gender #2068
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@jemten jemten marked this pull request as ready for review February 20, 2024 15:19
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jemten commented Feb 20, 2024

ready for review @henrikstranneheim

peterpru
peterpru approved these changes Feb 21, 2024
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Looks good to me! 👍

lib/MIP/Qcc_regexp.pm Outdated Show resolved Hide resolved
@jemten @peterpru
Update lib/MIP/Qcc_regexp.pm
dc66fad 
Co-authored-by: Peter Pruisscher <57712924+peterpru@users.noreply.github.com>
@jemten jemten merged commit 010a180 into develop Feb 21, 2024
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@jemten jemten deleted the peddy_check branch February 21, 2024 09:35
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@peterpru peterpru peterpru approved these changes

@henrikstranneheim henrikstranneheim Awaiting requested review from henrikstranneheim henrikstranneheim is a code owner

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Fail analysis for mismatch gender Fail analysis on error in Peddy
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@jemten @peterpru