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GATK SplitNCigarReads recipe, resolves #494 #496

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jemten
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@jemten jemten commented May 14, 2018

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Pull Request Test Coverage Report for Build 1325

  • 28 of 92 (30.43%) changed or added relevant lines in 3 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage decreased (-0.1%) to 82.479%

Changes Missing Coverage Covered Lines Changed/Added Lines %
lib/MIP/Recipes/Analysis/Gatk_baserecalibration.pm 0 1 0.0%
lib/MIP/Recipes/Pipeline/Rna.pm 1 7 14.29%
lib/MIP/Recipes/Analysis/Gatk_splitncigarreads.pm 27 84 32.14%
Totals Coverage Status
Change from base Build 1323: -0.1%
Covered Lines: 31281
Relevant Lines: 37926

💛 - Coveralls

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@henrikstranneheim henrikstranneheim left a comment

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Nice!

);

$parameter_href->{$mip_program_name}{$sample_id}{indirectory} =
$outsample_directory; #Used downstream
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Move comment above line and seperate '#' and string

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👍

@henrikstranneheim henrikstranneheim merged commit e170259 into Clinical-Genomics:develop May 16, 2018
@jemten jemten deleted the feature/splitcigarreads_recipe branch May 16, 2018 11:56
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3 participants