fix alembic script

Clinical-Genomics · May 15, 2024 · e56285b · e56285b
1 parent 73aacca
commit e56285b
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/alembic/versions/5c6de08c4aca_add_illumina_sample_run_metrics.py b/alembic/versions/5c6de08c4aca_add_illumina_sample_run_metrics.py
@@ -20,11 +20,11 @@
 def upgrade():
     op.create_table(
         "illumina_sample_run_metrics",
-        sa.Column("id", sa.Integer(), nullable=False, primary_key=True),
+        sa.Column("id", sa.Integer(), sa.ForeignKey("sample_run_metrics.id"), primary_key=True),
         sa.Column("flow_cell_lane", sa.Integer(), nullable=False),
         sa.Column("reads_in_lane", sa.BigInteger(), nullable=False),
-        sa.Column("base_passing_q30_percent", sa.Float(), nullable=False),
-        sa.Column("base_mean_quality_score", sa.Float(), nullable=False),
+        sa.Column("base_passing_q30_percent", sa.Numeric(6, 2), nullable=False),
+        sa.Column("base_mean_quality_score", sa.Numeric(6, 2), nullable=False),
         sa.Column("created_at", sa.DateTime(), nullable=False),
     )
 

diff --git a/cg/store/models.py b/cg/store/models.py
@@ -1002,7 +1002,7 @@ class SampleRunMetrics(Base):
 class IlluminaSampleRunMetrics(SampleRunMetrics):
     __tablename__ = "illumina_sample_run_metrics"
 
-    id: Mapped[int] = mapped_column(ForeignKey(SampleRunMetrics.id))
+    id: Mapped[int] = mapped_column(ForeignKey(SampleRunMetrics.id), primary_key=True)
     flow_cell_lane_number: Mapped[int | None]
     sample_total_reads_in_lane: Mapped[BigInt | None]
     sample_base_percentage_passing_q30: Mapped[Num_6_2 | None]