feat(store): updates tags for housekeeper

[jemten]

Updates tags for housekeeper relating to chromograph and upd tracks.
Relates to housekeeper/#76

The following tags should be added to housekeeper:

File type	Tags
<file-prefix>.regions.bb	upd, regions
<file-prefix>.sites.bb	upd, sites
<file-prefix>.regions_<contig>.png	chromograph, upd, regions
<file-prefix>.sites_<contig>.png	chromograph, upd, sites
<file-prefix>_<contig>.png	chromograph, tcov
<file-prefix>.<sample>.bw	rhocall-viz

How to prepare for test

• run justhusky with the config changes in servers/pull/#427
• ssh to hasta (depending on type of change)
• install on stage:
  bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-cg-stage.sh mip_9.0.3

How to test

• cg workflow mip-dna store analysis
• housekeeper get file -v <bundle-version>

Expected test outcome

• check that the files are added together with their respective tags ✅
• Take a screenshot and attach or copy/paste the output. ✅

Review

• code approved by HS
• tests executed by AJ
• "Merge and deploy" approved by HS
  Thanks for filling in who performed the code review and the test!

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[jemten]

@dnil - With this PR housekeeper should store the big bed file from upd and the big wig file from rhocall viz. Was there a plan to display these tracks in scouts IGV view?

[Mropat]

👍 Just need to post a validation screenshot to merge!

[dnil]

@dnil - With this PR housekeeper should store the big bed file from upd and the big wig file from rhocall viz. Was there a plan to display these tracks in scouts IGV view?

Nicely done! Yes, absolutely! There are keys for them in Scout; let me know if you want a list for the load config!

[coveralls]

Coverage remained the same at 73.603% when pulling ee82711 on mip_9.0.3 into 73ecc27 on master.

[jemten]

cg workflow mip-dna store analysis analysis/justhusky_config.yaml ✔️

housekeeper get file -v 24966 justhusky ✔️

[henrikstranneheim]

👍

[sonarcloud]

Kudos, SonarCloud Quality Gate passed!

0 Bugs
0 Vulnerabilities (and 0 Security Hotspots to review)
0 Code Smells

No Coverage information
0.0% Duplication

[henrikstranneheim]

👍

[henrikstranneheim]

Deployed on hasta: