docs: updated example for 2.0.1

Clinical-Genomics · Oct 27, 2019 · adf6e5b · adf6e5b
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diff --git a/docs/example/AKAP9_BRAF.html b/docs/example/AKAP9_BRAF.html
diff --git a/docs/example/BRD4_NUTM1.html b/docs/example/BRD4_NUTM1.html
diff --git a/docs/example/CD74_AL132671.2.html b/docs/example/CD74_AL132671.2.html
@@ -1227,7 +1227,7 @@ <h6 class="sidebar-heading d-flex justify-content-between align-items-center px-
     <h1 class="h2">CD74--AL132671.2</h1>
     <div class="btn-toolbar mb-2 mb-md-0">
         <div class="btn-group mr-2">
-            <p class="mb-0">Generated 30/08/2019<br><strong>test</strong></p>
+            <p class="mb-0">Generated 27/10/2019<br><strong>test</strong></p>
         </div>
     </div>
 </div>

diff --git a/docs/example/CD74_ROS1.html b/docs/example/CD74_ROS1.html
@@ -1227,7 +1227,7 @@ <h6 class="sidebar-heading d-flex justify-content-between align-items-center px-
     <h1 class="h2">CD74--ROS1</h1>
     <div class="btn-toolbar mb-2 mb-md-0">
         <div class="btn-group mr-2">
-            <p class="mb-0">Generated 30/08/2019<br><strong>test</strong></p>
+            <p class="mb-0">Generated 27/10/2019<br><strong>test</strong></p>
         </div>
     </div>
 </div>
@@ -1334,11 +1334,11 @@ <h1 class="h2">CD74--ROS1</h1>
                                         <dt class="col-sm-2">position</dt>
                     <dd class="col-sm-10">5:150404680:-#6:117324415:-</dd>
                                         <dt class="col-sm-2">junction_reads</dt>
-                    <dd class="col-sm-10">5</dd>
+                    <dd class="col-sm-10">7</dd>
                                         <dt class="col-sm-2">spanning_reads</dt>
                     <dd class="col-sm-10">0</dd>
                                         <dt class="col-sm-2">ffmp</dt>
-                    <dd class="col-sm-10">398.5334</dd>
+                    <dd class="col-sm-10">557.9468</dd>
                                     </dl>
             </p>
         </div>
@@ -1377,7 +1377,7 @@ <h1 class="h2">CD74--ROS1</h1>
             </p>
         </div>
                 <div class="card-body" id="card-raw" style="display: none">
-            <code>{'ericscript': {'position': '5:150404680:-#6:117324415:-', 'discordant_reads': 3, 'junction_reads': 14, 'fusion_type': 'inter-chromosomal', 'gene_expr1': 2.44, 'gene_expr2': 2.11, 'gene_expr_fusion': 19.87}, 'fusioncatcher': {'position': '5:150404680:-#6:117324415:-', 'common_mapping_reads': 0, 'spanning_pairs': 3, 'spanning_unique_reads': 7, 'longest_anchor': 30, 'fusion_type': 'in-frame'}, 'starfusion': {'position': '5:150404680:-#6:117324415:-', 'junction_reads': 5, 'spanning_reads': 0, 'ffmp': 398.5334}, 'pizzly': {'pair_count': 0, 'split_count': 2}, 'arriba': {'position': '5:150404680#6:117324415', 'reading-frame': 'in-frame', 'type': 'translocation', 'split_reads1': '2', 'split_reads2': '3', 'discordant_mates': '0', 'coverage1': '8', 'coverage2': '6', 'confidence': 'high'}}</code>
+            <code>{'ericscript': {'position': '5:150404680:-#6:117324415:-', 'discordant_reads': 3, 'junction_reads': 14, 'fusion_type': 'inter-chromosomal', 'gene_expr1': 2.44, 'gene_expr2': 2.11, 'gene_expr_fusion': 19.87}, 'fusioncatcher': {'position': '5:150404680:-#6:117324415:-', 'common_mapping_reads': 0, 'spanning_pairs': 3, 'spanning_unique_reads': 7, 'longest_anchor': 30, 'fusion_type': 'in-frame'}, 'starfusion': {'position': '5:150404680:-#6:117324415:-', 'junction_reads': 7, 'spanning_reads': 0, 'ffmp': 557.9468}, 'pizzly': {'pair_count': 0, 'split_count': 2}, 'arriba': {'position': '5:150404680#6:117324415', 'reading-frame': 'in-frame', 'type': 'translocation', 'split_reads1': '2', 'split_reads2': '3', 'discordant_mates': '0', 'coverage1': '8', 'coverage2': '6', 'confidence': 'high'}}</code>
         </div>
     </div>
 </section>                            <section class="fusion" id="fusion_gene_variations">
@@ -1706,7 +1706,7 @@ <h1 class="h3">Chimeric Protein-Protein interactions</h1>
     </div>
 </section>
 
-<input type="hidden" name="ppi" value='[{"classes": "core", "data": {"id": "fusion"}}, {"classes": "core", "data": {"id": "CD74"}}, {"classes": "core", "data": {"id": "ROS1"}}, {"classes": "core-connection", "data": {"id": "fusionCD74", "source": "fusion", "target": "CD74"}}, {"classes": "core-connection", "data": {"id": "fusionROS1", "source": "fusion", "target": "ROS1"}}, {"data": {"id": "HADHA"}}, {"data": {"id": "HADHA--CD74", "source": "CD74", "target": "HADHA"}}, {"data": {"id": "TM4SF20"}}, {"data": {"id": "TM4SF20--CD74", "source": "CD74", "target": "TM4SF20"}}, {"data": {"id": "COPG1"}}, {"data": {"id": "COPG1--CD74", "source": "CD74", "target": "COPG1"}}, {"data": {"id": "MIF"}}, {"data": {"id": "MIF--CD74", "source": "CD74", "target": "MIF"}}, {"data": {"id": "MAP3K1"}}, {"data": {"id": "MAP3K1--CD74", "source": "CD74", "target": "MAP3K1"}}, {"data": {"id": "APP"}}, {"data": {"id": "APP--CD74", "source": "CD74", "target": "APP"}}, {"data": {"id": "COPG2"}}, {"data": {"id": "COPG2--CD74", "source": "CD74", "target": "COPG2"}}, {"data": {"id": "HLA-DPB1"}}, {"data": {"id": "HLA-DPB1--CD74", "source": "CD74", "target": "HLA-DPB1"}}, {"data": {"id": "HLA-DQA1"}}, {"data": {"id": "HLA-DQA1--CD74", "source": "CD74", "target": "HLA-DQA1"}}, {"data": {"id": "CD74"}}, {"data": {"id": "CD74--CD74", "source": "CD74", "target": "CD74"}}, {"data": {"id": "CD44"}}, {"data": {"id": "CD44--CD74", "source": "CD74", "target": "CD44"}}, {"data": {"id": "LAMTOR5"}}, {"data": {"id": "LAMTOR5--CD74", "source": "CD74", "target": "LAMTOR5"}}, {"data": {"id": "PTPN11"}}, {"data": {"id": "PTPN11--ROS1", "source": "ROS1", "target": "PTPN11"}}, {"data": {"id": "GRB2"}}, {"data": {"id": "GRB2--ROS1", "source": "ROS1", "target": "GRB2"}}, {"data": {"id": "VAV3"}}, {"data": {"id": "VAV3--ROS1", "source": "ROS1", "target": "VAV3"}}, {"data": {"id": "IKBKG"}}, {"data": {"id": "IKBKG--ROS1", "source": "ROS1", "target": "IKBKG"}}, {"data": {"id": "PTPN6"}}, {"data": {"id": "PTPN6--ROS1", "source": "ROS1", "target": "PTPN6"}}]'>
+<input type="hidden" name="ppi" value='[{"classes": "core", "data": {"id": "fusion"}}, {"classes": "core", "data": {"id": "CD74"}}, {"classes": "core", "data": {"id": "ROS1"}}, {"classes": "core-connection", "data": {"id": "fusionCD74", "source": "fusion", "target": "CD74"}}, {"classes": "core-connection", "data": {"id": "fusionROS1", "source": "fusion", "target": "ROS1"}}, {"data": {"id": "TM4SF20"}}, {"data": {"id": "TM4SF20--CD74", "source": "CD74", "target": "TM4SF20"}}, {"data": {"id": "LAMTOR5"}}, {"data": {"id": "LAMTOR5--CD74", "source": "CD74", "target": "LAMTOR5"}}, {"data": {"id": "COPG1"}}, {"data": {"id": "COPG1--CD74", "source": "CD74", "target": "COPG1"}}, {"data": {"id": "MIF"}}, {"data": {"id": "MIF--CD74", "source": "CD74", "target": "MIF"}}, {"data": {"id": "HLA-DPB1"}}, {"data": {"id": "HLA-DPB1--CD74", "source": "CD74", "target": "HLA-DPB1"}}, {"data": {"id": "HLA-DQA1"}}, {"data": {"id": "HLA-DQA1--CD74", "source": "CD74", "target": "HLA-DQA1"}}, {"data": {"id": "MAP3K1"}}, {"data": {"id": "MAP3K1--CD74", "source": "CD74", "target": "MAP3K1"}}, {"data": {"id": "COPG2"}}, {"data": {"id": "COPG2--CD74", "source": "CD74", "target": "COPG2"}}, {"data": {"id": "APP"}}, {"data": {"id": "APP--CD74", "source": "CD74", "target": "APP"}}, {"data": {"id": "CD44"}}, {"data": {"id": "CD44--CD74", "source": "CD74", "target": "CD44"}}, {"data": {"id": "HADHA"}}, {"data": {"id": "HADHA--CD74", "source": "CD74", "target": "HADHA"}}, {"data": {"id": "CD74"}}, {"data": {"id": "CD74--CD74", "source": "CD74", "target": "CD74"}}, {"data": {"id": "VAV3"}}, {"data": {"id": "VAV3--ROS1", "source": "ROS1", "target": "VAV3"}}, {"data": {"id": "GRB2"}}, {"data": {"id": "GRB2--ROS1", "source": "ROS1", "target": "GRB2"}}, {"data": {"id": "PTPN11"}}, {"data": {"id": "PTPN11--ROS1", "source": "ROS1", "target": "PTPN11"}}, {"data": {"id": "PTPN6"}}, {"data": {"id": "PTPN6--ROS1", "source": "ROS1", "target": "PTPN6"}}, {"data": {"id": "IKBKG"}}, {"data": {"id": "IKBKG--ROS1", "source": "ROS1", "target": "IKBKG"}}]'>
 
 <script>
     var ppiObject = undefined;

diff --git a/docs/example/CIC_DUX4.html b/docs/example/CIC_DUX4.html
@@ -1227,7 +1227,7 @@ <h6 class="sidebar-heading d-flex justify-content-between align-items-center px-
     <h1 class="h2">CIC--DUX4</h1>
     <div class="btn-toolbar mb-2 mb-md-0">
         <div class="btn-group mr-2">
-            <p class="mb-0">Generated 30/08/2019<br><strong>test</strong></p>
+            <p class="mb-0">Generated 27/10/2019<br><strong>test</strong></p>
         </div>
     </div>
 </div>

diff --git a/docs/example/DUX4_IGH@.html b/docs/example/DUX4_IGH@.html
@@ -1227,7 +1227,7 @@ <h6 class="sidebar-heading d-flex justify-content-between align-items-center px-
     <h1 class="h2">DUX4--IGH@</h1>
     <div class="btn-toolbar mb-2 mb-md-0">
         <div class="btn-group mr-2">
-            <p class="mb-0">Generated 30/08/2019<br><strong>test</strong></p>
+            <p class="mb-0">Generated 27/10/2019<br><strong>test</strong></p>
         </div>
     </div>
 </div>

diff --git a/docs/example/EML4_ALK.html b/docs/example/EML4_ALK.html
diff --git a/docs/example/ETV6_NTRK3.html b/docs/example/ETV6_NTRK3.html
diff --git a/docs/example/EWSR1_ATF1.html b/docs/example/EWSR1_ATF1.html
diff --git a/docs/example/EWSR1_FLI1.html b/docs/example/EWSR1_FLI1.html