import secelt from sqlalchemy

genotype_api/api/endpoints/analyses.py

@@ -10,7 +10,8 @@
 from genotype_api.database import get_session
 from genotype_api.file_parsing.files import check_file
 from genotype_api.models import Analysis, AnalysisRead, AnalysisReadWithGenotype, User
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 
 from genotype_api.security import get_active_user
 from genotype_api.file_parsing.vcf import SequenceAnalysis

genotype_api/api/endpoints/plates.py

@@ -6,7 +6,8 @@
 
 from fastapi import APIRouter, Depends, File, HTTPException, UploadFile, Query, status
 from sqlalchemy import desc, asc
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 
 from genotype_api.crud.analyses import (
     get_analyses_from_plate,

genotype_api/api/endpoints/samples.py

@@ -27,7 +27,8 @@
     get_status_missing_samples,
     refresh_sample_status,
 )
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 from sqlmodel.sql.expression import SelectOfScalar
 
 from genotype_api.security import get_active_user

genotype_api/api/endpoints/snps.py

@@ -4,7 +4,8 @@
 
 from fastapi import APIRouter, Depends, HTTPException, Query, File, UploadFile
 from genotype_api.database import get_session
-from sqlmodel import Session, delete, select
+from sqlmodel import Session, delete
+from sqlalchemy import select
 
 from genotype_api.security import get_active_user
 

genotype_api/api/endpoints/users.py

@@ -10,7 +10,8 @@
 from genotype_api.crud.users import get_user
 from genotype_api.database import get_session
 from genotype_api.models import User, UserRead, UserCreate, UserReadWithPlates
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 
 from genotype_api.security import get_active_user
 

genotype_api/crud/analyses.py

@@ -4,7 +4,8 @@
 
 from genotype_api.constants import TYPES
 from genotype_api.models import Analysis
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 
 
 def get_analyses_from_plate(plate_id: int, session: Session) -> List[Analysis]:

genotype_api/crud/plates.py

@@ -1,7 +1,8 @@
 import logging
 from typing import Optional
 from genotype_api.models import Plate, PlateCreate
-from sqlmodel import Session, select
+from sqlmodel import Session
+from sqlalchemy import select
 
 LOG = logging.getLogger(__name__)
 

genotype_api/crud/samples.py

@@ -2,7 +2,8 @@
 
 from genotype_api.match import check_sample
 from genotype_api.models import Sample, Analysis
-from sqlmodel import Session, func, select
+from sqlmodel import Session, func
+from sqlalchemy import select
 from sqlmodel.sql.expression import SelectOfScalar
 from fastapi import HTTPException
 

genotype_api/crud/users.py

@@ -1,7 +1,8 @@
 from typing import List, Optional
 
 from genotype_api.models import User, UserCreate
-from sqlmodel import select, Session
+from sqlmodel import Session
+from sqlalchemy import select
 
 
 def get_user(session: Session, user_id: int):