Fix volume normalization and conversion

CoBrALab · Jun 3, 2022 · 5b8f86e · 5b8f86e
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diff --git a/mni_models/minc/PD25-T1GRE-template-0.5mm_labels.mnc b/mni_models/minc/PD25-T1GRE-template-0.5mm_labels.mnc
diff --git a/mni_models/minc/PD25-T1GRE-template-1mm_labels.mnc b/mni_models/minc/PD25-T1GRE-template-1mm_labels.mnc
diff --git a/mni_models/minc/PD25-T1MPRAGE-template-0.5mm_labels.mnc b/mni_models/minc/PD25-T1MPRAGE-template-0.5mm_labels.mnc
diff --git a/mni_models/minc/PD25-T1MPRAGE-template-1mm_labels.mnc b/mni_models/minc/PD25-T1MPRAGE-template-1mm_labels.mnc
diff --git a/mni_models/minc/average305_t1_tal_lin_labels.mnc b/mni_models/minc/average305_t1_tal_lin_labels.mnc
diff --git a/mni_models/minc/colin27_t1_tal_hires_labels.mnc b/mni_models/minc/colin27_t1_tal_hires_labels.mnc
diff --git a/mni_models/minc/colin27_t1_tal_lin_labels.mnc b/mni_models/minc/colin27_t1_tal_lin_labels.mnc
diff --git a/mni_models/minc/fix.sh b/mni_models/minc/fix.sh
@@ -0,0 +1,5 @@
+for file in *mnc; do
+    mincreshape -normalize -unsigned -byte -image_range 0 255 \
+        -valid_range 0 255 ${file} /tmp/$(basename ${file})
+    mv -f /tmp/$(basename ${file}) ${file}
+done
diff --git a/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09a_labels.mnc b/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09a_labels.mnc
diff --git a/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09b_hires_labels.mnc b/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09b_hires_labels.mnc
diff --git a/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09c_labels.mnc b/mni_models/minc/mni_icbm152_t1_tal_nlin_asym_09c_labels.mnc
diff --git a/mni_models/minc/mni_icbm152_t1_tal_nlin_sym_09a_labels.mnc b/mni_models/minc/mni_icbm152_t1_tal_nlin_sym_09a_labels.mnc
diff --git a/mni_models/minc/mni_icbm152_t1_tal_nlin_sym_09c_labels.mnc b/mni_models/minc/mni_icbm152_t1_tal_nlin_sym_09c_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_00-02_t1w_labels.mnc b/mni_models/minc/nihpd_asym_00-02_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_02-05_t1w_labels.mnc b/mni_models/minc/nihpd_asym_02-05_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_04.5-08.5_t1w_labels.mnc b/mni_models/minc/nihpd_asym_04.5-08.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_04.5-18.5_t1w_labels.mnc b/mni_models/minc/nihpd_asym_04.5-18.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_05-08_t1w_labels.mnc b/mni_models/minc/nihpd_asym_05-08_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_07.0-11.0_t1w_labels.mnc b/mni_models/minc/nihpd_asym_07.0-11.0_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_07.5-13.5_t1w_labels.mnc b/mni_models/minc/nihpd_asym_07.5-13.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_08-11_t1w_labels.mnc b/mni_models/minc/nihpd_asym_08-11_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_10.0-14.0_t1w_labels.mnc b/mni_models/minc/nihpd_asym_10.0-14.0_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_11-14_t1w_labels.mnc b/mni_models/minc/nihpd_asym_11-14_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_13.0-18.5_t1w_labels.mnc b/mni_models/minc/nihpd_asym_13.0-18.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_14-17_t1w_labels.mnc b/mni_models/minc/nihpd_asym_14-17_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_17-21_t1w_labels.mnc b/mni_models/minc/nihpd_asym_17-21_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_21-27_t1w_labels.mnc b/mni_models/minc/nihpd_asym_21-27_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_27-33_t1w_labels.mnc b/mni_models/minc/nihpd_asym_27-33_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_33-44_t1w_labels.mnc b/mni_models/minc/nihpd_asym_33-44_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_asym_44-60_t1w_labels.mnc b/mni_models/minc/nihpd_asym_44-60_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_04.5-08.5_t1w_labels.mnc b/mni_models/minc/nihpd_sym_04.5-08.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_04.5-18.5_t1w_labels.mnc b/mni_models/minc/nihpd_sym_04.5-18.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_07.0-11.0_t1w_labels.mnc b/mni_models/minc/nihpd_sym_07.0-11.0_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_07.5-13.5_t1w_labels.mnc b/mni_models/minc/nihpd_sym_07.5-13.5_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_10.0-14.0_t1w_labels.mnc b/mni_models/minc/nihpd_sym_10.0-14.0_t1w_labels.mnc
diff --git a/mni_models/minc/nihpd_sym_13.0-18.5_t1w_labels.mnc b/mni_models/minc/nihpd_sym_13.0-18.5_t1w_labels.mnc
diff --git a/mni_models/nifti/PD25-T1GRE-template-0.5mm_labels.nii.gz b/mni_models/nifti/PD25-T1GRE-template-0.5mm_labels.nii.gz
diff --git a/mni_models/nifti/PD25-T1GRE-template-1mm_labels.nii.gz b/mni_models/nifti/PD25-T1GRE-template-1mm_labels.nii.gz
diff --git a/mni_models/nifti/PD25-T1MPRAGE-template-0.5mm_labels.nii.gz b/mni_models/nifti/PD25-T1MPRAGE-template-0.5mm_labels.nii.gz
diff --git a/mni_models/nifti/PD25-T1MPRAGE-template-1mm_labels.nii.gz b/mni_models/nifti/PD25-T1MPRAGE-template-1mm_labels.nii.gz
diff --git a/mni_models/nifti/average305_t1_tal_lin_labels.nii.gz b/mni_models/nifti/average305_t1_tal_lin_labels.nii.gz
diff --git a/mni_models/nifti/colin27_t1_tal_hires_labels.nii.gz b/mni_models/nifti/colin27_t1_tal_hires_labels.nii.gz
diff --git a/mni_models/nifti/colin27_t1_tal_lin_labels.nii.gz b/mni_models/nifti/colin27_t1_tal_lin_labels.nii.gz
diff --git a/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09a_labels.nii.gz b/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09a_labels.nii.gz
diff --git a/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09b_hires_labels.nii.gz b/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09b_hires_labels.nii.gz
diff --git a/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09c_labels.nii.gz b/mni_models/nifti/mni_icbm152_t1_tal_nlin_asym_09c_labels.nii.gz
diff --git a/mni_models/nifti/mni_icbm152_t1_tal_nlin_sym_09a_labels.nii.gz b/mni_models/nifti/mni_icbm152_t1_tal_nlin_sym_09a_labels.nii.gz
diff --git a/mni_models/nifti/mni_icbm152_t1_tal_nlin_sym_09c_labels.nii.gz b/mni_models/nifti/mni_icbm152_t1_tal_nlin_sym_09c_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_00-02_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_00-02_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_02-05_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_02-05_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_04.5-08.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_04.5-08.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_04.5-18.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_04.5-18.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_05-08_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_05-08_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_07.0-11.0_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_07.0-11.0_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_07.5-13.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_07.5-13.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_08-11_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_08-11_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_10.0-14.0_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_10.0-14.0_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_11-14_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_11-14_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_13.0-18.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_13.0-18.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_14-17_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_14-17_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_17-21_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_17-21_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_21-27_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_21-27_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_27-33_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_27-33_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_33-44_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_33-44_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_asym_44-60_t1w_labels.nii.gz b/mni_models/nifti/nihpd_asym_44-60_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_04.5-08.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_04.5-08.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_04.5-18.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_04.5-18.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_07.0-11.0_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_07.0-11.0_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_07.5-13.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_07.5-13.5_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_10.0-14.0_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_10.0-14.0_t1w_labels.nii.gz
diff --git a/mni_models/nifti/nihpd_sym_13.0-18.5_t1w_labels.nii.gz b/mni_models/nifti/nihpd_sym_13.0-18.5_t1w_labels.nii.gz