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Fix issue 340 (snomed preprocessing) #343

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merged 2 commits into from
Sep 4, 2023
Merged

Fix issue 340 (snomed preprocessing) #343

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2fb2230
Add missing self argument
mart-r Aug 29, 2023
cea9d07
Merge branch 'master' into issue340Hotfix_preprocess_snomed
mart-r Sep 4, 2023
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2 changes: 1 addition & 1 deletion medcat/utils/preprocess_snomed.py
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Original file line number Diff line number Diff line change
Expand Up @@ -327,7 +327,7 @@ def _check_path_and_release(self):
raise FileNotFoundError('Incorrect path to SNOMED CT directory')
return paths, snomed_releases

def _refset_df2dict(refset_df: pd.DataFrame) -> dict:
def _refset_df2dict(self, refset_df: pd.DataFrame) -> dict:
"""
This function takes a SNOMED refset DataFrame as an input and converts it into a dictionary.
The DataFrame should contain the columns 'referencedComponentId','mapTarget','mapGroup','mapPriority','mapRule','mapAdvice'.
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