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CU-8692tz2vm: Move to medcat 1.9.3 #69

CU-8692tz2vm: Move to medcat 1.9.3

CU-8692tz2vm: Move to medcat 1.9.3 #69

Workflow file for this run

name: build
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
main:
runs-on: macos-11
strategy:
matrix:
part: [
introductory/Part_2_*.ipynb,
introductory/Part_3_*.ipynb,
introductory/Part_4_*.ipynb,
introductory/Part_5_*.ipynb,
introductory/Part_1_*.ipynb,
specialised/Comparing_Models_with_RegressionSuite.ipynb # this should work still
# specialised/*.ipynb # To make it run, the SnomedCT file needs to be mocked
]
steps:
- uses: actions/checkout@v2
- name: Setup Python
uses: actions/setup-python@v2
with:
python-version: "3.8"
- name: Install dependencies
run: |
pip install -U pip
pip install -r requirements-dev.txt
- name: Install IPython kernel
run: |
python -m ipykernel install --name smoketests
- name: Smoke test tutorial
run: |
pytest --collect-only --nbmake ./notebooks/${{ matrix.part }}
pytest --nbmake -n=auto --nbmake-kernel=smoketests --nbmake-timeout=1800 ./notebooks/${{ matrix.part }}