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Use new ADMB 12.2 functionality, add S3 class, improve plotting

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@Cole-Monnahan-NOAA Cole-Monnahan-NOAA released this 07 Aug 21:08

ADMB 12.2 was released in 8/2020 and includes some improvements to the algorithms. This adnuts release is designed to take advantage of those, but is backward compatible with ADMB 12.0 or 12.1. It also includes some major improvements:

  • New sample_nuts and sample_rwm functions to replace sample_admb
  • Deprecating the TMB functionality
  • A new adfit class for fitted objects and methods for print, summary, and plot
  • Improved plotting functionality
  • Default to parallel sampling

This release is passing CRAN checks for Windows and Linux (via Travis CI) but is not expected to be officially pushed to CRAN in the near future.