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commit 92d9eafcca7e6dc208d6163566a259318388cd20
Merge: aeb3a66bf 384354b74
Author: Cole Lyman <cole@colelyman.com>
Date: Tue Feb 27 21:13:37 2018 -0700
Merge branch 'master' of github.com:Colelyman/bioconda-recipes
commit aeb3a66bfdd03807f80a4895e0074963ea015bce
Author: Ralf Weber <RJMW@users.noreply.github.com>
Date: Wed Feb 28 00:55:39 2018 +0000
Bump version MetFrag to 2.4.2 (#8022)
commit 88497c107cdb5bec6ccc8c081f2bd6d3fd4e9055
Author: Dan Fornika <dfornika@gmail.com>
Date: Tue Feb 27 14:21:21 2018 -0800
Kaiju: Version 1.6.2 (#8014)
* Update kaiju to 1.6.2
* Update build.sh
* Corrected sha256
commit 0fec104044ede39416a2aed66021c830f09c7844
Author: Joachim Wolff <wolffj@informatik.uni-freiburg.de>
Date: Tue Feb 27 23:20:55 2018 +0100
Update tp 2.1-alpha (#8021)
* Update tp 2.1-alpha
* Update meta.yaml
* less strict pinning
* fix spelling mistake
commit 9aef9708f707a61ee74d0785b318948e6e9885d2
Author: Matthew Fogel <matthew-fogel@users.noreply.github.com>
Date: Tue Feb 27 14:04:34 2018 -0600
Update Msaboot to 0.1.1 (bug fix) (#8001)
* Incremented version number for bug fix
* Incremented build number
commit 608744216f6bb3b7e422506b41eb8b221c4bb0b8
Author: Michael Knudsen <micknudsen@gmail.com>
Date: Tue Feb 27 20:14:27 2018 +0100
Bumped GATK version (#8019)
commit e7805136f0152d62f9c9e932826a43194995fd25
Author: Daniel Cooke <dcooke@well.ox.ac.uk>
Date: Tue Feb 27 15:19:50 2018 +0000
Add 'DCMAKE_BUILD_TYPE=Release' to octopus cmake options (#7992)
Forces release build.
commit e3c4ef384dcf85872e877f7ec5e1d8aa09c21caf
Author: Jerome Kelleher <jk@well.ox.ac.uk>
Date: Tue Feb 27 14:15:43 2018 +0000
Removed svgwrite and msprime recipes. (#8016)
These have been superseded by upstream recipes in conda-forge.
commit 363877738d4dd58fce923fd9199ae8696b5a9f55
Author: Colin Brislawn <cbrisl@gmail.com>
Date: Tue Feb 27 01:26:53 2018 -0800
update BBMap (#8009)
commit 4a85ceca5b18d26821b855521efe6513fb7a62b2
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Tue Feb 27 00:28:59 2018 +0100
Bump flye (#8011)
commit 58cdd6d8ac5df8b690dbaa270b61a143cb78ee13
Author: Karel Břinda <kbrinda@hsph.harvard.edu>
Date: Mon Feb 26 18:25:16 2018 -0500
SamSift 0.2.5 (#8012)
commit 9de0e8f82cca09055b361e70bd529cd10664bff9
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Mon Feb 26 22:06:11 2018 +0100
update perl-yaml to 1.24 (#7997)
* update perl-yaml to 1.24
* add include test for perl-yaml 1.18
* adjusted perl version requirements
* fixed typo
commit 9e7ad86c9b63e06e49fe3fd920475b7c8e4d78ed
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Mon Feb 26 21:16:01 2018 +0100
Bump racon (#8010)
commit 125077444ac6065c86edf598ab4b360a7ccd18ca
Author: Renan Valieris <rvalieris@users.noreply.github.com>
Date: Mon Feb 26 14:59:50 2018 -0300
rebuild filtlong (#8005)
commit 5271a61515db3625a7498f3e27d5912bd0b193c5
Author: Will Rowe <will.rowe@stfc.ac.uk>
Date: Mon Feb 26 17:45:34 2018 +0000
updating groot to v0.2 (#8004)
commit f2acce2e072970d78d5186bb3d46638d31d18dd8
Author: Renan Valieris <rvalieris@users.noreply.github.com>
Date: Mon Feb 26 14:40:48 2018 -0300
asorted fixes 2 (#8003)
* fix detonate
* use certificate to download stuff with wget
commit 81b626f4f4fd87a59ef31f3da5a00a10db9e7c68
Author: Christian Brueffer <christian@brueffer.io>
Date: Mon Feb 26 14:59:15 2018 +0100
Add bioconductor-hapfabia. (#8000)
commit 57602a6e0fe7d591872bd55118eed017e741ef51
Author: Christian Brueffer <christian@brueffer.io>
Date: Mon Feb 26 12:51:14 2018 +0100
Add bioconductor-fabia. (#6726)
* Add bioconductor-fabia.
* Unconditionally use gcc.
* bioconductor-fabia: use clang; drop -lgfortran
* bioconductor-fabia: test with toolchain (i.e., -Wl,-rpath,$PREFIX/lib)
* bioconductor-fabia: cleanup
* bioconductor-fabia: show log for compilation errors
* bioconductor-fabia: add libgfortran [osx] to run requirements
commit fceee40a8b19ceb89fe2da26ae0218096c73be8c
Author: Björn Grüning <bjoern@gruenings.eu>
Date: Mon Feb 26 11:44:48 2018 +0100
rebuild coreutils (#7999)
commit 17cd3140f4ac95813306ab0f1eae87c3feb26824
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Mon Feb 26 00:25:32 2018 +0100
Bump sourmash (#7998)
commit f3f09ef56fd0a43a6181f2412bf0090f8f276165
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Sun Feb 25 21:49:51 2018 +0100
Fixing racon (#7978)
* Fixing racon
* Add missing hash
* Add cmake
* They released a updated 1.0.0 version...
* Cleaning up
commit 3419efa675a10a13afcae64f2d9839b079db1c0d
Author: John Blischak <jdblischak@gmail.com>
Date: Sun Feb 25 13:55:15 2018 -0500
Add Bioconductor package scde. (#7859)
* Add Bioconductor package scde.
* Add libXrender as a dependency for scde.
* Add libSM as a dependency for scde.
* Add libXext as a dependency for scde.
* add libcxx
* Pin X11 dependencies.
https://github.com/conda-forge/r-rmarkdown-feedstock/pull/5/commits/2e35b271c392509c2c9f96e2630f2fca4f1424f1
commit d3115652ed7e35e4eeb4e80afbdd29122dfb0630
Author: Heng Li <lh3@me.com>
Date: Sun Feb 25 10:23:07 2018 -0500
Updated minimap2 and mappy to v2.9 (#7996)
commit f9d194d5d051c8933293cda36fd262ba21da6659
Author: Brad Chapman <chapmanb@fastmail.com>
Date: Sun Feb 25 05:11:01 2018 -0500
Update fastp 0.12.3 with polyG improvements (#7995)
commit ade4a2b3d53de77e2f9f6b0b4b8a5ed7082d97cc
Author: rspreafico <rspreafico@users.noreply.github.com>
Date: Fri Feb 23 22:01:35 2018 -0800
update shortstack (#7994)
commit 00ee08eb57545fa90b4a12df06ef58eeb3b01e53
Author: Yasset Perez-Riverol <ypriverol@gmail.com>
Date: Sat Feb 24 01:57:11 2018 +0000
identifiers added to the abyss container (#7940)
commit 2d8243356ad528334e7b0731639de9624f8ca9ad
Author: Slugger70 <slugger70@gmail.com>
Date: Sat Feb 24 08:35:38 2018 +1100
chewBBACA version bump to 2.0.6 (#7982)
commit 0affd3550e5d08079bc14f55c35d527eabdef987
Author: Renan Valieris <rvalieris@users.noreply.github.com>
Date: Fri Feb 23 17:11:35 2018 -0300
asorted fixes (#7984)
* asorted fixes
* pin bzip2
* add hash
* add cflags for samtools
* try update r-spp and skip osx
commit d04e12831cad2e343c92e52efb9a5226e3824928
Author: Kevin R. Thornton <krthornt@uci.edu>
Date: Fri Feb 23 11:59:32 2018 -0800
update recipe to fwdpy11 0.1.3.post2 (#7991)
* update recipe to fwdpy11 0.1.3.post2
* bump version yet again b/c I goofed the sdist for .post2
commit 60c35fc58108f90e38c6004f7ac6dea875b7208d
Author: Erik Clarke <eclarke@users.noreply.github.com>
Date: Fri Feb 23 12:57:06 2018 -0500
new rbt release (#7990)
commit 62ff725b6a4712d36e8f5f3f4a11ca21ca06b56c
Author: Christian Brueffer <christian@brueffer.io>
Date: Fri Feb 23 18:03:57 2018 +0100
Remove redundant R packages. (#7989)
* Remove r-fnn.
It is a general package and exists on conda-forge in the same version.
* Remove r-factominer, it exists on conda-forge.
* Remove r-ggthemes.
It is a general package and exists on conda-forge in the same version.
commit a931916a89522e1045e8c109250a295a0ebf8312
Author: Davide Chicco <davide.chicco@gmail.com>
Date: Fri Feb 23 11:50:51 2018 -0500
behst2.9 (#7988)
commit 4880c5feb15a0dbf550b02b9d76f94662d48ae4b
Author: David Laehnemann <david.laehnemann@hhu.de>
Date: Fri Feb 23 17:13:06 2018 +0100
Unblacklist prosolo (#7973)
* prosolo: attempt unblacklisting
* workaround for conda-build bug
workaround for the bug that seems to be behind the error that got this
and other rust recipes blacklisted
* make unsetting safer
thanks to @mbargull at:
https://github.com/bioconda/bioconda-recipes/issues/7712#issuecomment-367803930
commit b30f1f4ffc462d65e6a48384180b5d5b7811b194
Author: Christian Brueffer <christian@brueffer.io>
Date: Fri Feb 23 17:02:08 2018 +0100
Remove r-ggsignif. (#7985)
It is a general package and exists on conda-forge in the same version.
commit fd032223e0ce752660f354bb095c3fe8009394c7
Author: Brad Chapman <chapmanb@fastmail.com>
Date: Fri Feb 23 06:50:06 2018 -0500
Update: bcbio with effects/trim CWL support (#7980)
commit 5462f14636dcc660915d6537124d392e4b293c1b
Author: Davide Chicco <davide.chicco@gmail.com>
Date: Thu Feb 22 18:32:42 2018 -0500
behst2.8 (#7977)
commit 6918532f77613c5f9b172237f15904c71f90743f
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Thu Feb 22 22:40:30 2018 +0100
Bump swga (#7976)
commit a56e2c7d52e886140c30ca3596df07f5e2236d0d
Author: zachcp <zachcp@users.noreply.github.com>
Date: Thu Feb 22 16:09:35 2018 -0500
Downpore12 (#7926)
* bump version
* move new src subdirectories
* mapping is a newer directory than last release
commit 6fb993241fd706c7e58abc64df92165cefde43bc
Author: Davide Chicco <davide.chicco@gmail.com>
Date: Thu Feb 22 15:28:47 2018 -0500
version behst2.7 in Python3.5 (#7974)
BEHST package for Python3.5
commit a6e6c4412981a4eb99a7b6dd0bdf93a666f3f41c
Author: Peter Cock <p.j.a.cock@googlemail.com>
Date: Thu Feb 22 18:34:33 2018 +0000
kodoja v0.0.3 (#7970)
commit 1e519214eb78d06b8e6289a5f2ad348c0cfcd489
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Thu Feb 22 19:04:42 2018 +0100
add recipe for treekin (#7971)
* add recipe for treekin
* added home URL
commit 44dfc9e94cf8f0b5d3c0f5fa2a8481560254b517
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Thu Feb 22 17:19:08 2018 +0100
Bump racon to 1.0.0 (#7969)
commit e37eb5ae15378e3a34c9949d8b9d9b1894dc5e5b
Author: Gildas Le Corguillé <lecorguille@users.noreply.github.com>
Date: Thu Feb 22 13:43:46 2018 +0100
add r-asics (#7953)
commit c7223a272e58798bfed4f0709fbddad2f151ac32
Author: Michael Kluge <klugem@users.noreply.github.com>
Date: Thu Feb 22 13:25:13 2018 +0100
new watchdog release 1.2.6 (#7966)
commit c2656db73dfea609d70e584817e5dc3a1b470240
Author: Will Rowe <will.rowe@stfc.ac.uk>
Date: Thu Feb 22 10:58:00 2018 +0000
update groot to v0.2 (#7960)
* adding recipe for groot
* adding recipe for groot
* adding recipe for groot
* adding recipe for groot
* adding recipe for groot
* switching to compile GROOT from source
* switching to compile GROOT from source
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
* updating GROOT to v0.2
commit 4dbf875456ce98b02ce44798823621b987c17c26
Author: Wei Shen <shenwei356@gmail.com>
Date: Thu Feb 22 16:18:17 2018 +0800
update csvtk to v0.13.0 (#7964)
commit 6a5b6781441426c3a209fbe2515c70fcfc4c49d0
Author: Jens Preußner <jenzopr@users.noreply.github.com>
Date: Thu Feb 22 08:39:14 2018 +0100
Bumped comb-p version to 0.48 (#7958)
commit 4602ca450dc4d8f14afe00a543eeb1a18a03610f
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Wed Feb 21 21:59:38 2018 +0100
added tests to bio-perl-viennangs(#7961)
commit 081cd7437bd2871de85b37ee88164e80417bbdbf
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Wed Feb 21 20:26:09 2018 +0100
add recipe for perl-bio-viennangs v0.18 (#7955)
* add recipe for perl-bio-viennangs v0.18
* typo fixed
* removed perl-bio-sequtils dependency
* added ucsc-fatotwobit dependency
* added ucsc-bedtobigbed dependency
* removed file-basename dependency
commit f78b0cc9f6eb6a7ee41bae22bf670e063d1d894a
Author: Marcel Martin <mail@marcelm.net>
Date: Wed Feb 21 18:23:37 2018 +0100
Cutadapt 1.16 (#7957)
commit 1b963b5d872c56bdebb568e4898c210cff0f3c61
Author: Karl Nordström <karl.nordstrom@gmail.com>
Date: Wed Feb 21 17:49:20 2018 +0100
Adding Bis-SNP v0.82.2. (#7397)
* Adding Bis-SNP v0.82.2. The bioconda code is built upon the picard code
commit 6831a0dd473d60598b77511642b51ee5303d3375
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Wed Feb 21 17:39:57 2018 +0100
add recipe for perl-file-share (#7959)
commit c6f951bb16cafd902ee77954ebddfd38741dfab0
Author: Johannes Köster <johannes.koester@tu-dortmund.de>
Date: Wed Feb 21 12:25:31 2018 +0100
snakemake 4.7.0 (#7952)
* snakemake 4.7.0
* Add missing dependency.
commit f55c4f31bd298c5a12e6b58f134366afb0c61d43
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 22:44:35 2018 +0100
add recipe for perl-ipc-cmd (#7951)
commit 9185d701d3256ac16fc1738ee8ccf9c42e944a27
Author: David Laehnemann <david.laehnemann@hhu.de>
Date: Tue Feb 20 21:27:55 2018 +0100
prosolo: update to version 0.4.0 (#7948)
commit 1d4480049a8d83a7dc8352e1e71c7186fa1028e1
Author: Florian Eggenhofer <egg@informatik.uni-freiburg.de>
Date: Tue Feb 20 20:33:04 2018 +0100
Added libxml2 dependency, unblacklisted cmv recipe (#7860)
* Added libxml2 dependency, unblacklisted cmv recipe
* Changed constraint on libgmp
* Updated stack, gmp
* Updated gmp
* Added pthread-stubs
* Updated linker flags
* Updated linker flags - again
* Updated linker flags - 3
* Updated linker flags - 4
* Updated linker flags - 5
* Updated linker flags - 6
* Switched requested ghc variant
* Updated linker flags - 7
* Updated - 8
* Updated - 9
* Updated - 10
* Updated library path
* Passing threaded option to ghc
* Passing stack install options also to setup
* Changed stack setup options
* Updated stack to 1.6.5
* Added lib and lib64
* Fixed extra lib path
* Switched to /usr/lib64
* Simplifying recipe
* Simplified recipe 2
commit ade8b7f1ced822c0c896758b4a80dcf88b6a42b7
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 20:06:29 2018 +0100
add perl-module-load-conditional 0.68 (#7946)
commit 811a844ae0b2b4f4b3ffd33500bce4cc54e6ab0c
Author: Davide Chicco <davide.chicco@gmail.com>
Date: Tue Feb 20 13:11:59 2018 -0500
behst2.6 (#7945)
commit 8bc76775fdec2f68aabbf15003ddb92a7fb7fbcc
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 18:53:46 2018 +0100
add recipe for perl-module-corelist (#7944)
commit f4c57db142c9521d551eee2c3114badf40bcde76
Author: Philippe Bordron <pbordron@users.noreply.github.com>
Date: Tue Feb 20 18:25:21 2018 +0100
Stacks update to 2.0Beta8c (#7868)
* Update to 2.0Beta8c
* Update meta.yaml
* revert back to linux only
* Update meta.yaml
* stacks 2.0: enable osx builds
commit c3121f522a3006b023378c281ebbfff351533749
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 18:20:46 2018 +0100
add recipe for perl-test-file-contents (#7943)
commit 0f8cb2039fcdc26780a7f3ee00b18fcc341be44b
Author: Karl Nordström <karl.nordstrom@gmail.com>
Date: Tue Feb 20 16:46:13 2018 +0100
update Bamutil (#7935)
* bamutil:
- push build number
- switched build script to use curl
- add zlib, curl and openssl as dependencies
- disabled profiling in makefile as this stopped compilation
- apply sed fix only to OPTFLAG_PROFILE line
- adding review suggestions from mbargull
- documenting the modification of the makefile
- adding checksum for libStatGen
- and adding the corresponding dependencies for the the check
commit 611d3773084bad78cbee2386dd6cd3825b51b5fb
Author: Davide Chicco <davide.chicco@gmail.com>
Date: Tue Feb 20 09:51:33 2018 -0500
Behst2.5 (#7923)
* Fixed the problem on the Python2.7
* edited python commands
* Update build.sh
* Update run_test.sh
commit ca8cb8cf2402f5d204c729402dbcca023f49704d
Author: Christian Brueffer <christian@brueffer.io>
Date: Tue Feb 20 15:27:07 2018 +0100
Add bioconductor-flowq. (#7936)
commit 9ea7be364e28ce29d217225d3dd418b820d95c44
Author: Christian Brueffer <christian@brueffer.io>
Date: Tue Feb 20 14:29:53 2018 +0100
Remove r-idpmisc. (#7937)
It is a general package and exists in conda-forge in the same version
as in bioconda, thus our recipe is redundant.
commit 1517b10c31b83f463be8ff5e807742d33f822cb1
Author: Christian Brueffer <christian@brueffer.io>
Date: Tue Feb 20 14:06:10 2018 +0100
Update Picard to 2.17.10. (#7934)
commit 43fcd91ab60028c3b366f7d0612e4f3e47d26436
Author: Brad Chapman <chapmanb@fastmail.com>
Date: Tue Feb 20 07:57:19 2018 -0500
Update: cwltool, cwltest, toil, arvados and deps (#7933)
Updates cwltool to latest release shared by Toil and Arvados CWL runner.
Includes matching updates to cwltool dependencies: cgcloud, cwltest and
schema-salad.
Unpins boto in toil, avoiding issues with old version of boto. Fixes
chapmanb/bcbio-nextgen-vm#167
commit 6b53732252d4cde2f6ae388ad4b564b29e14d7f5
Author: Ralf Weber <RJMW@users.noreply.github.com>
Date: Tue Feb 20 11:16:06 2018 +0000
Bump version dimspy (#7932)
commit 368ffd42acbabd16ad5e6d2467d6145d24e6e94d
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 11:52:54 2018 +0100
add perl-test-prereq (#7931)
commit 8fa27a8fac754d07e2152fa2f64f8c082082bf91
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 11:22:53 2018 +0100
Perl module extract use (#7930)
* add perl-module-extract-use
commit 491664ec5a2d9a6cc1d0c9aaad316ec94919aac7
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 10:49:26 2018 +0100
Perl ppi (#7924)
* add perl-ppi
* added perl-hook-lexwrap dependency
* add perl-class-xsaccessor dependency
* removed comments
commit 660796790cc8f85a8e746c46643000a335344b53
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 09:36:04 2018 +0100
Perl test subcalls (#7865)
* add perl-test-subcalls
* fixed perl-test-builder-tester dependency
* add perl-hook-lexwrap dependency
commit d60d36ee4a5bfaa0c227147f75d354712def67f5
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Tue Feb 20 08:11:30 2018 +0100
add perl-class-xsaccessor (#7925)
commit ca62523f8b3dc86a88dd6c989bbeed7d1c544ee5
Author: Christian Brueffer <christian@brueffer.io>
Date: Tue Feb 20 00:59:57 2018 +0100
Add r-tidygenomics. (#7929)
commit 831566d4f04e7e6dd079eb4d88c24af275ed3d43
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:34:12 2018 +0100
Added recipe for cisPath (#7875)
commit 68ea9b79d9ff32098aee0dd5dffc374d0315480a
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:33:46 2018 +0100
Added recipe for ClassifyR (#7874)
commit 40d1c2e175e20ba8a8691aaef165f166d9901ffb
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:33:33 2018 +0100
Added recipe for CINdex (#7876)
commit a0168ce576775bb4a5ed6c0ba267a6ece8de8324
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:33:19 2018 +0100
Added recipe for chromstaR (#7877)
commit 94080b4a78ede7f03a4c18a2227e40415acad25b
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:33:03 2018 +0100
Added recipe for ChromHeatMap (#7878)
commit 38b8497d04efadbfc3d186413b6aa9832613664b
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:32:29 2018 +0100
Added recipe for chopsticks (#7879)
commit 395d53cd6dc5f56809c5446e7f1a67c3ae4982b6
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:31:56 2018 +0100
Added recipe for CGHnormaliter (#7882)
commit 4944fedba12247cd6c62a443ae39e88a9b0a8167
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:30:47 2018 +0100
Added recipe for iCOBRA (#7883)
commit b37ab5be03b7eeb5366d01ddaa03982461eab05a
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:30:33 2018 +0100
Added recipe for iChip (#7884)
commit 8680b5e53fc79b8a08dcd05421154802112029b1
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:15:39 2018 +0100
Added recipe for cleanUpdTSeq (#7873)
commit 41dd406278999ac768d15ffc47ece1a99b360598
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:15:17 2018 +0100
Added recipe for clonotypeR (#7872)
commit d22bed87ef04a16dc6ffa46978425f743e863b43
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:14:57 2018 +0100
Added recipe for clstutils (#7871)
commit 19d5661362a63a572ce51b254e073b5a5fd2d4b5
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:14:36 2018 +0100
Added recipe for ibh (#7885)
commit d9087168d9ed8bdb480f9df2668ed879b8e91708
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:14:12 2018 +0100
Added recipe for iASeq (#7886)
commit 873f4af0e3aad26a7839fe80b144b4ab92a91765
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:12:50 2018 +0100
Added recipe for CancerInSilico (#7887)
commit 649b44ce2edd2aa702f7ff6d1bcf17e5bf28b87e
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:12:37 2018 +0100
Added recipe for BUS (#7888)
commit 60aaee4246659bd07a3dba3373fec18868f5d9a5
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:12:26 2018 +0100
Added recipe for BufferedMatrixMethods (#7889)
commit 63270220ff728ba221cc6d68f662d48fc98ccd67
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:11:47 2018 +0100
Added recipe for BrowserVizDemo (#7890)
commit 0dd4f6cc5a10a85ff0f8924ffe28420cf838d3a5
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:11:30 2018 +0100
Added recipe for bridge (#7891)
commit 1732cad70dda834e7d08fa50da8a5707e5332617
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:10:52 2018 +0100
Added recipe for BrainStars (#7892)
commit 1521cde047f286dca20457ee0abd28ae6ba286df
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:10:41 2018 +0100
Added recipe for BiRewire (#7893)
commit e56203461322252832f436a95948c7f2cb6dd03a
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 21:10:21 2018 +0100
Added recipe for BioQC (#7895)
commit bb6791a311a4e258bb514e0c40ef6355197fd701
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:09:52 2018 +0100
Added recipe for biosvd (#7894)
commit 7487c126415414581bd5cdbdb00ac455e7602c6c
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:09:40 2018 +0100
Added recipe for hopach (#7901)
commit 56792d451e88c3acc7658cccaed54395f540a6f8
Author: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
Date: Mon Feb 19 20:06:32 2018 +0100
nextflow 0.27.6 (#7864)
commit 78cacc91edf17111c69c6b344bffa35fc8181ead
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:06:04 2018 +0100
Added recipe for BioMVCClass (#7896)
commit 356f46fd181495bae0f2f82a11258f82c8e2e7ac
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:02:45 2018 +0100
Added recipe for hyperdraw (#7897)
commit b8c3bff0cee1efa1318be8fade5b3b2bf73ba2a5
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:02:28 2018 +0100
Added recipe for HybridMTest (#7898)
commit f7e5b8d6dbb18e037096f6e91e4f8007295c9c5b
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 20:01:19 2018 +0100
Added recipe for htSeqTools (#7899)
commit 398d27b46aac58e54e6cafe2ad1ee633835f3330
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 19:35:18 2018 +0100
Added recipe for HTqPCR (#7900)
commit 5184537aed24cccae1aaa08713e2ba1428c0f662
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 19:18:35 2018 +0100
Added recipe for HiTC (#7902)
commit 3f120a09032cc9b532707e2ced9e9ecdfe48b0a7
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 19:00:00 2018 +0100
Added recipe for HIBAG (#7903)
commit 35832be06334043ac08fa26a01090a254acf5f28
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:59:42 2018 +0100
Added recipe for HEM (#7904)
commit 3c04f152889dca8e904d054e840c0660084fe956
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:54:30 2018 +0100
Added recipe for HELP (#7905)
commit eb95f49690655bf720ae3cfe935d918d71df0ecf
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:50:23 2018 +0100
Added recipe for Harshlight (#7906)
commit af0f2dc6022a851b0d15beed4b19f8f9acb59c7e
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:50:10 2018 +0100
Added recipe for Harman (#7907)
commit 4103c4fe56eb97192a4f61abcb10fc5276dfe683
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:43:49 2018 +0100
Added recipe for GSRI (#7908)
commit bc5e0e08552b6369a456d5b11794e756fe1272d4
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:29:29 2018 +0100
Added recipe for GSReg (#7909)
commit 4fa732f24cddd558b74fc1d3d1f1e5d9c3bfa3e6
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Mon Feb 19 18:23:53 2018 +0100
add perl-test-object (#7921)
commit 07a60076e50b30e0da8031d33e978db3202c6d26
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:22:58 2018 +0100
Added recipe for GSEAlm (#7910)
commit 6aa3f9f7f823a928825ea7bc4b5fa445b15003de
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:22:35 2018 +0100
Added recipe for GSCA (#7911)
commit 35a903d706f7f663992feaa379b80229eb8efdb9
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:22:11 2018 +0100
Added recipe for GSALightning (#7912)
commit f87e8f0babd75b4dccc7b7a8304375545e991579
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:21:52 2018 +0100
Added recipe for GRmetrics (#7913)
commit 73c58dfa5144ffa6f0de07d1624d96d1755206eb
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:21:35 2018 +0100
Added recipe for GraphAT (#7914)
commit 0487b213def927148ad5a582b988ce88a3a74332
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:12:41 2018 +0100
Added recipe for ChIPXpress (#7880)
commit f47f67dd55dc8804814ee9080cded9a5eb692897
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:12:21 2018 +0100
Added recipe for ChIPsim (#7881)
commit 459c7e7a8596b0d0a1d0287cc1ad6b450c86d611
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Mon Feb 19 18:11:44 2018 +0100
add perl-file-remove (#7870)
commit 615430729e9a4f7c8fd6ee57f3b8e4a7d6a2a538
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:11:25 2018 +0100
Added recipe for gpls (#7915)
commit 15145ca5ec4438347789bccc8ad1673681bebfae
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 18:02:19 2018 +0100
Added recipe for goTools (#7916)
commit 7898f493a8e3c3769a673f02c4df3e180ea3b74f
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 17:56:35 2018 +0100
Added recipe for wateRmelon (#7917)
commit d712bb15af4eeda235286174e4747dc2cf3792f4
Author: ArneKr <arnekratz@hotmail.de>
Date: Mon Feb 19 17:31:33 2018 +0100
Added recipe for waveTiling (#7918)
commit 68f0f068375f130fc5f9ebc3c2718f4a44adfceb
Author: Jim Johnson <jj@umn.edu>
Date: Mon Feb 19 09:43:29 2018 -0600
flashlfq_0.1.101 (#7919)
* flashlfq_0.1.101
Update flashlfq to version 0.1.101
* flashlfq_0.1.101 update sha256
commit 1c12b3aba79ac8251b7e5c2139fb315446848a1e
Author: Renan Valieris <rvalieris@users.noreply.github.com>
Date: Mon Feb 19 10:16:00 2018 -0300
fix metavelvet recipe (#7813)
* fix metavelvet recipe
commit 109b6f10c5703fcc65a219ee255d3d1bdaeaba1c
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Mon Feb 19 11:30:06 2018 +0100
add perl-hook-lexwrap (#7863)
commit 51eed1481db69a43c7b86e85dbba5ee86987907a
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Mon Feb 19 08:34:53 2018 +0100
update perl-pathtools -> 3.73 (#7862)
* update perl-pathtools -> 3.73
* added tests
commit 04936800915d16839e25eb8f4d30dd4f55f3cae6
Author: Bérénice Batut <berenice.batut@gmail.com>
Date: Mon Feb 19 00:12:27 2018 +0100
Add metaphlan2 2.7.5 (#7861)
commit d6615c2316649d551ef30c622b5f6263f00ccb09
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:39:08 2018 +0100
Added recipe for interactiveDisplay (#7852)
commit 99b99f7d53f8b0173053b6d8b8d9277a8c3c84b5
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:38:55 2018 +0100
Added recipe for inveRsion (#7851)
commit 681dcc590e065cd0a3a8f5b6f75fc456cb97d07a
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:38:45 2018 +0100
Added recipe for IPPD (#7850)
commit d8d5dc508d22460bc9e802d56d3f442ab736fa5b
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:38:34 2018 +0100
Added recipe for iSeq (#7849)
commit e2a9db68cb6f05d9c8992f7eac1c448839bdadd4
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:38:25 2018 +0100
Added recipe for ISoLDE (#7848)
commit cda3242dcdb7d80c75794b678d09286b67477c34
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:37:41 2018 +0100
Added recipe for iterativeBMA (#7847)
commit de2d757122bb1d33721899384814a065194c680c
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:37:34 2018 +0100
Added recipe for iterativeBMAsurv (#7846)
commit 21ae3249cef94cc7a4c1687efb956a2932380edb
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:37:26 2018 +0100
Added recipe for MCRestimate (#7845)
commit 3ccf0050d80b1116ab6b3bde2c0024021a8813b1
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:37:19 2018 +0100
Added recipe for KEGGlincs (#7844)
commit 024eaa8c1dda5b132bb03cbdbf0cf5803f68af36
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:37:09 2018 +0100
Added recipe for keggorthology (#7843)
commit 5affeb1b850762a47c58c26025635b14e1027964
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:34:42 2018 +0100
Added recipe for kimod (#7842)
commit 9b6c93d4ff5ddebedf80b79598c92fb44d93ba86
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:34:37 2018 +0100
Added recipe for LBE (#7841)
commit 4b4355a6f07420ae0aa4a6c5e2ba5b4a414881dc
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:34:27 2018 +0100
Added recipe for les (#7840)
commit 85a2a0519e9005e66ead5210e35fe508ea896395
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:34:17 2018 +0100
Added recipe for lfa (#7839)
commit 9d277158aef743e7da90fde7e576ac42d6403ae9
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:34:00 2018 +0100
Added recipe for LINC (#7838)
commit 462294a6902625cefc3f4431f7eaf02d39304478
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:53 2018 +0100
Added recipe for CMA (#7837)
commit 5a7f50c07eb8bfb36f2bb15e135e4adb06888603
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:48 2018 +0100
Added recipe for cn.farms (#7836)
commit d4b20632ef941d7643c0baba80aa7bcc431a5c45
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:41 2018 +0100
Added recipe for LiquidAssociation (#7835)
commit 296f0c1f6461036563778bcc695369bf812ac4f3
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:33 2018 +0100
Added recipe for lmdme (#7833)
commit ab586c21abf0e5f88a3e2f13d3edf199674803bb
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:26 2018 +0100
Added recipe for CNVPanelizer (#7832)
commit 87c5376fa5932039e1f3a9a7433477b7f2d664c9
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:33:12 2018 +0100
Added recipe for LOBSTAHS (#7831)
commit 1fe51b48e40a5988ebb6476d32ca573571a366cf
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:32:44 2018 +0100
Added recipe for CNVtools (#7830)
commit 65c567fcc7485a1654777b79ef5bb3377434ae02
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:32:19 2018 +0100
Added recipe for INSPEcT (#7853)
commit ff51b3819da54ce8d4544a5ec559586247cb8b65
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:29:20 2018 +0100
Added recipe for INPower (#7854)
commit ba0d7d5f734c5765021f18aaf800149db2321dae
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:28:54 2018 +0100
Added recipe for ImpulseDE (#7855)
commit a2a0bbf2dece573dc4a4d67e3084552ddc08ab5c
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:25:42 2018 +0100
Added recipe for clusterStab (#7856)
commit 064df095e36aae59a61d2567a245717d42b11087
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:25:29 2018 +0100
Added recipe for ClusterSignificance (#7857)
commit 2c61e34eac4d92b1e50e52ce7d224e18f59eaeac
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:23:32 2018 +0100
Added recipe for CNORfuzzy (#7834)
commit bdcdb57634855dff1a9f64abc71c8bb6c4f0b38e
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:22:09 2018 +0100
Added recipe for clustComp (#7858)
commit e6826bb5adadd0250b0e47702554e3b7ad5e530d
Author: ArneKr <arnekratz@hotmail.de>
Date: Sun Feb 18 17:16:20 2018 +0100
Added recipe for lol (#7829)
commit b9cf497976ba3c82de862a17fb43bb5255c0221c
Author: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
Date: Sun Feb 18 17:14:58 2018 +0100
nextflow 0.27.5 (#7817)
commit 189b08ff36423d21de413a2f45c2ec7331e832fb
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Sun Feb 18 00:20:04 2018 +0100
add perl-moosex-clone (#7826)
* add perl-moosex-clone
* Update build.sh
* removed comments from meta.yaml
commit 6f5d5294ec9303b2d6249a681fe734ba50852991
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Sat Feb 17 23:53:02 2018 +0100
added perl-data-visitor and perl-tie-toobject (#7812)
* added perl-data-visitor and perl-tie-toobject
* fixed runtime perl requirements
* Update build.sh
commit 56cfbde81d6e80520a2b16f08af1e16a638f6aeb
Author: Florian Eggenhofer <egg@informatik.uni-freiburg.de>
Date: Sat Feb 17 23:46:51 2018 +0100
Updated to version 2.1.3 (#7828)
commit df2937f2ffa5e40091d6602cf919031cbcad5dc0
Author: Christian Brueffer <christian@brueffer.io>
Date: Sat Feb 17 23:12:28 2018 +0100
Add bioconductor-ffpe. (#7388)
commit 1b4d77cd6605853746d3bfb9f20c3c5e11cd9cae
Author: Björn Grüning <bjoern@gruenings.eu>
Date: Sat Feb 17 18:29:28 2018 +0100
Update meta.yaml (#7825)
commit d7a7d03c969e4379ff00218a8bb1012a0e0f5c82
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Sat Feb 17 18:24:39 2018 +0100
Perl hash util fieldhash compat (#7821)
* added recipe for perl-tie-refhash
* updated license
* added recipe for perl-tie-refhash-weak
* add perl-hash-util-fieldhash-compat recipe
* fixed perl dependencies
commit 9fbdb9d18d714d6d43d4376fbcf967ce6055ab7f
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Sat Feb 17 10:41:17 2018 +0100
added recipe for perl-tie-refhash (#7801)
* added recipe for perl-tie-refhash
* updated license
* added recipe for perl-tie-refhash-weak
commit 960a2b127c487f5263229541df5d3e5567040b87
Author: Johannes Köster <johannes.koester@tu-dortmund.de>
Date: Sat Feb 17 09:42:22 2018 +0100
Pin bamtools (#7701)
* Pin bamtools
* Pin bamtools.
* fix build string.
* increase build number
* Fix lints.
* fix constraint
commit 5fbf388903e6d0dc70bfb1f351ea4216d047af1f
Author: Dan Fornika <dfornika@gmail.com>
Date: Fri Feb 16 17:54:02 2018 -0800
Update MentaliST to v0.2.1 (#7824)
commit 68e8b620728059ebb75bf1366e225dd41df3902d
Author: Dan Fornika <dfornika@gmail.com>
Date: Fri Feb 16 16:18:15 2018 -0800
Move MentaLiST v0.1.3 recipe to separate directory (#7818)
* Add MentaLiST v0.1.3 recipe to separate dir
* mentalist 0.1.3: workaround SSL certificate issue
commit 29cacdfc0ad0004ddfc09475dbddaaa0ecc2e104
Author: Phillip Brooks <ptbrooks@ucdavis.edu>
Date: Fri Feb 16 16:15:00 2018 -0800
Bump kaiju to latest version (#7213)
* Changed url to master from latest version
Modified url to master from latest release to take advantage of recent changes including gzip compatibility.
* Updated url to reference latest commit
Modified url from master to latest commit to enable reproducibility
* Change to released version
* Trying to fix OS10 error - Modified fn
* Attempting to fix macOS build error
* Update meta.yaml
* troubleshooting kaiju build on macOS
added -p per https://github.com/bioinformatics-centre/kaiju/issues/20
* Changed -p to -e
troubleshooting macos build. Linux build is passing. Getting the following error '''File "/tmp/workspace/miniconda/bin/conda-build", line 6, in <module>
sys.exit(conda_build.cli.main_build.main())
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 342, in main
execute(sys.argv[1:])
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 333, in execute
noverify=args.no_verify)
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/api.py", line 97, in build
need_source_download=need_source_download, config=config)
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/build.py", line 1524, in build_tree
config=config)
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/build.py", line 1147, in build
utils.check_call_env(cmd, env=env, cwd=src_dir)
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/utils.py", line 628, in check_call_env
return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs)
File "/tmp/workspace/miniconda/lib/python3.6/site-packages/conda_build/utils.py", line 624, in _func_defaulting_env_to_os_environ
return func(_args, **kwargs)
File "/tmp/workspace/miniconda/lib/python3.6/subprocess.py", line 291, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e', '/tmp/workspace/miniconda/conda-bld/kaiju_1517006552538/work/kaiju-1.6.0/conda_build.sh']' returned non-zero exit status 2.'''
* Updating test command as per suggestion from @mbargull
* kaiju: update to 1.6.1
* kaiju: fix no_link entry
commit de71fa6bb2455dcf61a9e9a2d04567169d37a078
Author: Marcel Bargull <mbargull@users.noreply.github.com>
Date: Sat Feb 17 00:19:19 2018 +0100
stacks 2.0: add lower bound for libgcc version (#7815)
* stacks 2.0: add lower bound for libgcc version
* stacks 2.0: remove never used [linux32]
* stacks 2.0: nearly forgot to bump build number!
commit f609a6c37e5a1df8b3b418e15b24ed02292b536f
Author: Brad Chapman <chapmanb@fastmail.com>
Date: Fri Feb 16 17:57:57 2018 -0500
Update: bcbio to avoid htslib pinning (#7820)
Avoids downgrades of bcbio on htslib changes.
commit 685f80c4c27330b8bf9a9b3cd6abcadfa773308c
Author: Marcel Bargull <mbargull@users.noreply.github.com>
Date: Fri Feb 16 23:46:41 2018 +0100
edlib: update to 1.2.3 (#7697)
* edlib: update to 1.2.3
* edlib: cleanup; remove subdirs of unmaintained old versions
* edlib: add a note about the aligner exe rename
commit e08546f666e5184d098222ed8a549f645de893ef
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:41:00 2018 +0100
Added recipe for codelink (#7811)
commit 3d023871794a16247d84b35ebd5e0d1ad2e1fd4c
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:40:49 2018 +0100
Added recipe for cogena (#7810)
commit 2c5257e3145e029654647e5edb93c11456d18919
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:40:38 2018 +0100
Added recipe for coGPS (#7809)
commit 20e13504ec0a461e452514c39e480d19fd47d392
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:40:25 2018 +0100
Added recipe for COHCAP (#7808)
commit 73c8558079f53606535b02b9798332575163ea4b
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:40:16 2018 +0100
Added recipe for COMPASS (#7807)
commit 76f193a8f3af37792dde863b141331b832f57239
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:40:03 2018 +0100
Added recipe for consensusSeekeR (#7806)
commit bd17cf50b63b169de2d5d5489fea3684a1e47197
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:39:53 2018 +0100
Added recipe for contiBAIT (#7805)
commit 2a3284fa555463f820b96c6e509d1b454c226208
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:39:39 2018 +0100
Added recipe for CopywriteR (#7804)
commit 9a4c23a346831361d0facdcbc7a7b840ec662a18
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:39:29 2018 +0100
Added recipe for Cormotif (#7803)
commit 474da29ecdb802dc17702324a159e0d6d0d4b504
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 15:39:16 2018 +0100
Added recipe for CORREP (#7802)
commit af2846bf3a15239256647935f6af16c2f676db2f
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 12:13:20 2018 +0100
Added recipe for cosmiq (#7800)
commit d1d74e7aca1d1fe8f8c11f5f20fdaab0e8a93a8e
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 12:13:05 2018 +0100
Added recipe for LPEadj (#7799)
commit d55cdbcee9910ee38da2ba47870dd963a6e51ba5
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 12:12:40 2018 +0100
Added recipe for lpNet (#7798)
commit ca39a394931046ca0dc3daea8dad0792c40fc244
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:02:45 2018 +0100
Added recipe for LVSmiRNA (#7797)
commit 6f1fd7162a2f40054ea88d1f39d6f2e08ff4b840
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:02:35 2018 +0100
Added recipe for M3D (#7796)
commit 4f36b1dcfff1ad38fb09afd152a98dc9080e075e
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:02:26 2018 +0100
Added recipe for MADSEQ (#7795)
commit b8710ea15aec03fd7d5423b5dfa489f1abf795ac
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:02:16 2018 +0100
Added recipe for maigesPack (#7794)
commit af45c76c859307f3e4089b1c637acc2b9aad36ce
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:02:05 2018 +0100
Added recipe for maPredictDSC (#7793)
commit f43643c4eb2615af584d092ee9c608d8f72ddab4
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:01:54 2018 +0100
Added recipe for maskBAD (#7792)
commit be2288e92449d99222ba6c3f8c1adb7a9df4bb9b
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:01:43 2018 +0100
Added recipe for MeasurementError.cor (#7791)
commit 97447fd7cc2afc4a3f8d0835379e562e4b12eafc
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:01:32 2018 +0100
Added recipe for covRNA (#7790)
commit 2c7b1db449e2a5dc6eefddff5b5bb3711c8d4bdf
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:01:19 2018 +0100
Added recipe for cpvSNP (#7789)
commit 4a9e9315bd53b336affea2295da513e443cc66c6
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:01:08 2018 +0100
Added recipe for CRImage (#7788)
commit 28c271a65e128054fc2448a1f82ca1364f400b8c
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:00:57 2018 +0100
Added recipe for crisprseekplus (#7787)
commit eb9a61579fc6b7939b4fec3adafeba3d710a963e
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:00:48 2018 +0100
Added recipe for CrispRVariants (#7786)
commit 7c00edec35ea441323e24b6bfaa6e55cd74b9aff
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:00:38 2018 +0100
Added recipe for ctsGE (#7785)
commit 7fd3290d20079942141270dd3046f99c0c9f9542
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 11:00:27 2018 +0100
Added recipe for CVE (#7784)
commit 701554008788f1acf6e6e5ae269b9ebaa2a18873
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:59:27 2018 +0100
Added recipe for daMA (#7783)
commit ecbe68afb9621d2bfef8f7343665dd53e1bc7ece
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:59:17 2018 +0100
Added recipe for DBChIP (#7782)
commit 5a81b3668bc43104528cee7c172fa48d3a663f2f
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:59:07 2018 +0100
Added recipe for dcGSA (#7781)
commit e04cfa5106e4d9cbeaccd3fb703d8d2eeb7a6717
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:57 2018 +0100
Added recipe for DChIPRep (#7780)
commit 0dbfaa94ef87e9015c489a21f68097b5f1008474
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:46 2018 +0100
Added recipe for MEDME (#7779)
commit 91e133ff7e435af4167c0ecd6d850aa21a83c723
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:36 2018 +0100
Added recipe for MEIGOR (#7778)
commit 7539cb1f7b176c457d03cce0fb6b819056a93ac8
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:27 2018 +0100
Added recipe for ddCt (#7777)
commit fa1db5afa6e7c8d11a27848ea41a2ad0c2b4cb37
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:17 2018 +0100
Added recipe for meshes (#7776)
commit 48596f67f7bf9fc7d7334391dc7b56df9bd14d55
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:58:06 2018 +0100
Added recipe for Metab (#7775)
commit 1eee769d731a4db9104ba6d40d756d90aaadc378
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:57:56 2018 +0100
Added recipe for MetaboSignal (#7774)
commit 7213e2202b5ac6e41b9f0c5bc13cadd0c97a6fa9
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:57:46 2018 +0100
Added recipe for methyAnalysis (#7773)
commit bc0ae5f97c05f209b453c88038d1bcb5ce65a616
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:57:34 2018 +0100
Added recipe for DEDS (#7772)
commit ee795343e7981a097f7c8f4e9cf70e8dacbfe890
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:52:04 2018 +0100
Added recipe for DNABarcodes (#7771)
commit 192652e2e11f1e02cc3a9a38b29c4f73eb00723c
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:54 2018 +0100
Added recipe for DOQTL (#7770)
commit 9c1cee43f363004080d03b2506638bcb4880947d
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:44 2018 +0100
Added recipe for DrugVsDisease (#7769)
commit a1d85fcdd34576fbd2b6aa5f2fff50a2ae200ced
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:34 2018 +0100
Added recipe for DeepBlueR (#7768)
commit 23dc220d680c9b1da32715aff3f25bd0d78cabc7
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:25 2018 +0100
Added recipe for DEFormats (#7767)
commit f2dfd95625f94356d3da230f054f213fa7393fe8
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:15 2018 +0100
Added recipe for DEGraph (#7766)
commit 9773eca6b4061621c3a8cb4ee767edaf78078caa
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:51:06 2018 +0100
Added recipe for DeMAND (#7765)
commit 083d18eaab39c67a0792432f432734daa826e308
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:57 2018 +0100
Added recipe for MineICA (#7764)
commit 5724e1a14927500a2577c62d8a71406ba1897e0e
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:47 2018 +0100
Added recipe for MinimumDistance (#7763)
commit ca5c4cf85d04c2c26abc65b7cd6a92dd439c034e
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:37 2018 +0100
Added recipe for mirIntegrator (#7762)
commit 77848f99a6a2faff12e66bef93b5271cbf0ccb68
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:27 2018 +0100
Added recipe for miRNAmeConverter (#7761)
commit ef45abfdf51b61745b86d0ff21de952c06cba394
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:17 2018 +0100
Added recipe for dexus (#7760)
commit 7429059fb12426ebec87d69f5363d920cb7e91bd
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:50:07 2018 +0100
Added recipe for DFP (#7759)
commit a34957866e222039370226ced200fd693d4bb01b
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:49:57 2018 +0100
Added recipe for diffGeneAnalysis (#7758)
commit 7c28f72c284b123548bcd20a3c01ca6c0272ddcf
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:49:47 2018 +0100
Added recipe for diffloop (#7757)
commit 06bbc6382d7e91c2b0fb93cd2ae8e991d907f523
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:49:39 2018 +0100
Added recipe for Director (#7756)
commit 4cfe24096a9253201744279dcd1d61119516ecbe
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:48:03 2018 +0100
Added recipe for easyRNASeq (#7755)
commit 8e462b47e429f8a832e2c549a0881b7e945f6a1d
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:47:52 2018 +0100
Added recipe for missMethyl (#7754)
commit bbe4aa297b1e235f5a6202dfe10f62e45a5a0b93
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:47:39 2018 +0100
Added recipe for mQTL.NMR (#7753)
commit 6e2949b5636bccadf429dff385b4da1fc54ca2dd
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:47:28 2018 +0100
Added recipe for EDDA (#7752)
commit 4da3d9a235745fb635728d826fb2e9b6113d6b76
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:47:15 2018 +0100
Added recipe for MSnID (#7751)
commit cfb9dfda7c14d6e3ff3d1bb34da6eb0da67ee27d
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:47:04 2018 +0100
Added recipe for EmpiricalBrownsMethod (#7750)
commit d038257fa5ab7d07780eec0f094b83dfa722baff
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:46:50 2018 +0100
Added recipe for ENCODExplorer (#7749)
commit 49dfeba173c068c00d77c8f90242ce6c924f2af9
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:46:38 2018 +0100
Added recipe for EnrichmentBrowser (#7748)
commit f3d9beceb7b0a140f01b768f877e00ba3655f469
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:46:27 2018 +0100
Added recipe for epigenomix (#7747)
commit bada3577172e6996275aa096ee424b563a40d24c
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:46:13 2018 +0100
Added recipe for MultiAssayExperiment (#7746)
commit b59ea711067ca0c5d0688d0b3f620268d41859a0
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:46:05 2018 +0100
Added recipe for multiClust (#7745)
commit d7299a87a53a0c7fb7a491740493e7e06b3ae23f
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:45:54 2018 +0100
Added recipe for epivizrStandalone (#7744)
commit f5598f5bce28e88046598c632bd53a5adec4716a
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:45:43 2018 +0100
Added recipe for esetVis (#7743)
commit 939d4b3244e6de4abe8b004c26c2a35edb836f5f
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:45:32 2018 +0100
Added recipe for eudysbiome (#7742)
commit c3e7457e7707f5dfc6056e6d35acdee4eab59dc0
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:45:21 2018 +0100
Added recipe for ExiMiR (#7741)
commit e863f1e38728a851c3a06a26959b5ac8ae51cce8
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:45:10 2018 +0100
Added recipe for exomePeak (#7740)
commit 18f13941934f6beddd776ce9ab6de8ac7fcc660b
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:28:10 2018 +0100
Added recipe for FindMyFriends (#7739)
commit c7c6fa93cd6adeeac57c2360de0731f6a5eff5cb
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:27:53 2018 +0100
Added recipe for flowMatch (#7738)
commit cfe965bbb3c1dee53cf06ce06d63a5e67c9f5a95
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:27:33 2018 +0100
Added recipe for geneRxCluster (#7737)
commit c1ceebd1cf909f4bc3d2658fabb1b217d2a6d7cc
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:27:23 2018 +0100
Added recipe for GeneSelector (#7736)
commit 31be69de6867c9952edb589c8e976fd5912a2832
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:27:09 2018 +0100
Added recipe for PathoStat (#7735)
commit 5a3d7d941fc0f173719ac5d995c3fbcd08755dc8
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:27:00 2018 +0100
Added recipe for pathRender (#7734)
commit 61a797ba8838f2862bbfc5f2bc83c12b32ad7744
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:26:50 2018 +0100
Added recipe for pathVar (#7733)
commit f5814e77455759c32eaaf24f1c4dd406d3cc36ab
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:26:40 2018 +0100
Added recipe for Pbase (#7732)
commit 9ba28aeed3682c88e5a1f4f79693e80806d62709
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:26:30 2018 +0100
Added recipe for geNetClassifier (#7731)
commit 4c46c37026adbb87133008ad716529a35de3b2b2
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:26:19 2018 +0100
Added recipe for GeneticsDesign (#7730)
commit 407f986496282d408e818210f21bc101c36ad8b3
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:23:56 2018 +0100
Added recipe for pcaGoPromoter (#7729)
commit 13df0553bb2f8bb3e82c5102c87f3bfe84178047
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:23:45 2018 +0100
Added recipe for GenoGAM (#7728)
commit 6119e849fbea7b9ca345a5d27ff305e9c91d6159
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:23:27 2018 +0100
Added recipe for PCpheno (#7727)
commit e57e477c6eedb1cc7d697d97df9f5e070f8d8858
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:23:16 2018 +0100
Added recipe for GenRank (#7726)
commit bd3ef4ed0b15dc65fb49a12a3edd258152558a11
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:23:06 2018 +0100
Added recipe for GEOsubmission (#7725)
commit da7fb2f1725c48f4f361b047ae6707d3335d986a
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:09:30 2018 +0100
Added recipe for pRolocGUI (#7724)
commit 5bae735a184bff94a9c742dcc43a52cea5c6bcdf
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:09:15 2018 +0100
Added recipe for qsea (#7723)
commit a135a47526d87777436f70d745398649e7f946b0
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:08:47 2018 +0100
Added recipe for QuartPAC (#7722)
commit 03ae80f0640245a3d27c76658979e72b99e26bda
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:08:35 2018 +0100
Added recipe for QuaternaryProd (#7721)
commit 11aba2ddd2d3d6a2d7d57f57a3698afcbcf62f78
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:08:22 2018 +0100
Added recipe for RareVariantVis (#7720)
commit 5483ac702389de27b7cb39524baa947dbb1d6b65
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:08:11 2018 +0100
Added recipe for Rariant (#7719)
commit 91704c72c8320901e2dcc4c58897d116cc0b8a9a
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:07:46 2018 +0100
Added recipe for GAprediction (#7718)
commit 74732d92c5e1c919b235a84a634be4f91de1ea58
Author: ArneKr <arnekratz@hotmail.de>
Date: Fri Feb 16 10:07:00 2018 +0100
Added recipe for gcatest (#7716)
commit 4fe7bdb4d7ed42e68fcb199d3659321762eaff81
Author: Philip Reiner Kensche <vinjana@users.noreply.github.com>
Date: Fri Feb 16 10:04:06 2018 +0100
Perl json create (#7525)
* Perl JSON::Create.
* Fix.
* Changed perl-threaded to perl.
commit e947f4895df0622c2451dffb2b45c6cf38ea66a4
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Fri Feb 16 10:00:52 2018 +0100
add recipe fore perl-filedirutil (#7715)
commit 01f6c50c11266729b6e9f7d3f97792f7fc7460fd
Author: Michael T. Wolfinger <michael@wolfinger.eu>
Date: Fri Feb 16 07:22:14 2018 +0100
added recipes/perl-params-coerce (#7710)
* added recipes/perl-params-coerce
* updated perl-params-coerce meta.yaml
* fixed meta.yaml
* Delete bld.bat
* specified acceptable perl versions
commit ce2abe1491faf2f01bb4969f24607d84ac8300a0
Author: Andreas Sjödin <andreas.sjodin@gmail.com>
Date: Thu Feb 15 23:13:56 2018 +0100
Fixing perl-net-ssleay (#7713)
* Add perl-mime-base64
* Bump perl-net-ssleay
* simplify test
commit 1f9ec5890d7d67c075a134906796ffc0962ceeae
Author: Björn Grüning <bjoern@gruenings.eu>
Date: Thu Feb 15 21:50:16 2018 +0100
merge bulk into master (#7711)
* Update bulk (#6274)
* new version of graphicsmagick with --enable-symbol-prefix option when building (#6120)
* add bioconductor v3.4 versions (#6124)
* update r-aroma* (#6126)
* create recipe for perl-types-standard (#6125)
* Create build.sh
* Create meta.yaml
* Create recipe for perl-bio-cigar (#6118)
* Create build.sh
* Create meta.yaml
* Update meta.yaml
* Update meta.yaml
* Update meta.yaml
* Update meta.yaml
* Update meta.yaml
* Update meta.yaml
* Update meta.yaml
* remove bioconductor-peca from blacklist (#6129)
* rebuild r-packages (#6128)
* Update meta.yaml (#6134)
* Add BamM package (#6133)
* Add bamm
* Update galaxy_sequence_utils to 1.1.1 (#6136)
* updated recipe (#6138)
* add bioconductor-jaspar2014 (#6137)
* Haystack 0.5.2 (#6140)
* updated recipe
* updated recipe
* dr-disco v0.11.0 (#6142)
* Add several R and Bioconductor recipes (#5428)
* initial version of recipes
* remove last lines
* add missing dependencies
* added missing dependencies
* added recipe for r-sfsmisc
* move r-recipes to conda-forge and remove empty lines in bioc recipes
* remove recipes that have been already added since last push
* remove r-sfsmisc
* Update gffread to 0.9.9. (#6146)
* Add recipe for bioconductor-scran (#6143)
* Initial recipe of bioconductor-scran
* Modified R dependency
* Updated cmv to version 1.0.6 (#6147)
* Hansel | Pinning attrs version (#6135)
* Added recipe for "Heidelberg Subtyping". This includes tailoring of the python environment within the build.sh file.
* Fixing the directory within build.sh
* Fixing the ordering of the sed command, moving to after the pip install.
* Removing SED tailoring for now, and adding "which" as a test command.
* Changing repository as we have now migrated to the PHAC NML repository.
* Changing to official release branch now.
* Fixing MD5 value.
* Fixing requirements and test command.
* Changing the testing command, as the new help contains invalid characters.
* Removing list of authors from summary within meta.yaml.
* Adding Detailed Summary
Added detailed summary including authors.
* Deleting python version file.
Deleting un-needed file.
* Changing recipe to rely on PyPi and fixed the build script.
* Adding python setup parameters.
* Removing pinning, and adding skip for Python 2.
* Changing URL to standard. Added variable for hash type and val.
* Pinning version of attrs.
* Update trim_galore to 0.4.4. (#6148)
* Downgrade networkx dependency (#6094)
Networkx has recently been updated to 2.0, which is incompatible with `colormath` - `spectra` dependency (see https://github.com/ewels/MultiQC/pull/561 and
https://github.com/ewels/MultiQC/issues/592). Until a new `colormath` version is released, we have to downgrade networkx dependency for MultiQC.
* Updating Last (lastal) to v874 (#6141)
* updating to last 874
* switch for OSX specific compilation with new makefile
* adding 8 byte binaries (for large DBs using big RAM)
* Snakemake 4.1.0 (#6150)
* Update Bamm (#6156)
* bump gnu-getopt build (#6157)
gnu-getopt depends on gettext, which had a linking issue with 0.19.8 (fixed in 0.19.8.1). This bumps gnu-getopt to hopefully trigger a rebuild with gettext 0.19.8.1 from conda-forge
* [WIP] add sis (#6055)
* [WIP] add sis init
* [wip] sis build passes local
* [WIP] added python req
* [WIP] changed build script
* Add package MentaLiST-0.1.2 (#5856)
* Initial commit
* Updated to v0.1.2
* Updated url and sha256 hash
* Filled in missing fn field
* Added requirement mpfr
* Specify openblas build to force conda-forge build of julia
* Revert last change
* Updated build section to skip osx build (no julia available)
* Moved MentaLiST.jl -> mentalist symbolic link command to build.sh
* Mapsembler2 (#6159)
* Remove unneeded samtools run requirement (#6155)
CrossMap uses pysam.
* update shovill (#6152)
* bumped shovill version to 0.8.0
* added conda_perl
* added version requirements
* discosnp (#6149)
* discosnp
* fix sed compatibility
* pin zlib against {{CONDA_ZLIB}}*
* Haystack 0.5.2 (#6164)
* updated recipe
* updated recipe
* updated sha256
* Haystack 0.5.2 (#6165)
* updated sha256
* fixed build number
* Kissplice (#6154)
* Kissplice
* pin zlib against {{CONDA_ZLIB}}*
* add python libraries
* remove make test
* fix python dependency
* uncomment make test
* IntaRNA v2.0.5 (#6160)
* v2.0.5 released
* reset build number to 0
* Update: bcbio-vm for ansible 2.x compatibility (#6167)
* Adds Deeptools 1.5.8.2 and 1.5.9.1 (#6166)
* deeptools: add old 1.5.8.2 version
* deeptools: minor update for linux build
* deeptools: add missing requirement for ucsc-bedgraphtobigwig
* deeptools: add 1.5.9.1
* Perl io gzip (#6158)
* first commit
* first commit
* Remove zlib-devel dependency
* Add a dependency to zlib (zlib-devel not found)
* Update build.sh with CFLAGS and LDFLAGS
* update build.sh with CFLAGS and LDFLAGS
* Add zlib reuirement
* Back to the perl-io-html model
* Back to the perl-io-html model + env vars for compliation and ld
* [lint skip uses_setuptools for recipes/qcumber]
* [lint skip uses_setuptools for recipes/qcumber]
* [lint skip uses_setuptools for recipes/qcumber]
* [lint skip uses_setuptools for recipes/qcumber]
* [lint skip uses_setuptools for recipes/qcumber]
* [lint skip uses_setuptools for recipes/qcumber]
* pin zlib
* bump build number (#6174)
* Added recipe for bioconductor-copynumber (#6170)
* Haystack 0.5.2 (#6176)
* updated recipe
* updated recipe
* updated sha256
* fixed build number
* updated hash
* improved patch (#6173)
* Update meta.yaml (#6179)
Oups, I forgot to check the build number
* Update Bamm (#6180)
* Discosnp fix dependencies (#6182)
* discosnp
* fix sed compatibility
* pin zlib against {{CONDA_ZLIB}}*
* fix dependencies binaries not found during the execution
* Bump mash to 2.0 (#6168)
* Bump mash to 2.0
* Pin zlib
* Discosnp fix scripts path in .sh (#6185)
* discosnp
* fix sed compatibility
* pin zlib against {{CONDA_ZLIB}}*
* fix dependencies binaries not found during the execution
* fix scripts path in .sh
* fix dbh5 path for copy
* Update mssttitch version to 2.5 (#6181)
* Update mssttitch version to 2.5
* Fix setup.py for conda after linting
* GraphProt (#6183)
* add GraphProt version 1.1.6
* update shiver (#6175)
* update Graphprot version 1.1.7 (#6188)
* add python3 dependency, need at least weblogo 3
* version bump
* Tantan (#6189)
Adding tantan: a utility for masking low complexity sequences
* Updated haystack sha256 (#6178)
* updated sha256
* updated sha256
* Haystack bio (#6190)
* updated haystack 0.5.3
* updated haystack 0.5.3
* updated sha256
* updated sha256
* updated sha256
* updated sha256
* updated last aligner to 876 (#6191)
* updated last aligner to 876
* updated spades to 3.11.1 bug-fix release (#6192)
* updated sha256sum (#6193)
* adding mappy (#6195)
* adding mappy
* adding import test
* removed double whitelines
* fixing yaml
* fixing yaml - adding build
* fixing yaml - removed space
* fixing yaml - no idea
* fixed files - maybe
* added zlib
* dummy change
* trying environmental variables in build.sh
* removed comments
* specified CONDA zlib in requirements
* adding nanolyse (#6196)
* adding mappy
* adding import test
* removed double whitelines
* fixing yaml
* fixing yaml - adding build
* fixing yaml - removed space
* fixing yaml - no idea
* fixed files - maybe
* added zlib
* dummy change
* trying environmental variables in build.sh
* removed comments
* specified CONDA zlib in requirements
* adding nanolyse
* lowercase name
* corrected import test
* Fix url and description (#6197)
* Update vcf2db to 2017.09.14. (#5433)
* Bumped STAR-Fusion version (#6198)
* HUMAnN2 requires diamond<0.9.0 (#6194)
* HUMAnN2 requires diamond<0.9.0
* Fix pre-existing linting errors
* Increment build numbers
* update r-sartools (#6201)
* Update: latest version with CollectErccMetrics (#6205)
* Takeabreak software (#6145)
* first commit for takeabreak
* add zlib requirement
* fix sed compatibility
* pin zlib against {{CONDA_ZLIB}}*
* delete decrease of memory
* Mapsembler2 (#6206)
* Mapsembler2
* fi mapsembler2 deps
* Htseq 0.9.1 (#6204)
* Add recipe for HTSeq-0.9.1
* Delete files
* Add recipe for htseq
* Update vsearch to 2.4.4 (#6211)
* Update picard to 2.13 (#6212)
* bump t…- Loading branch information
