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build!: freeze existing notebook outputs #12

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merged 19 commits into from
Jun 4, 2021
Merged

build!: freeze existing notebook outputs #12

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ffe1939
build!: move dependencies to notebooks
redeboer Jun 4, 2021
a2f91e4
style: set nbstripout keep_output as nb metadata
redeboer Jun 4, 2021
9a71baa
chore: activate keep_output in reports
redeboer Jun 4, 2021
8806c3e
fix: expertsystem version in operators notebook
redeboer Jun 4, 2021
85cf485
chore: update cell output adr-001/operators
redeboer Jun 4, 2021
bdebeae
chore: update cell output ard-001/sympy
redeboer Jun 4, 2021
4ec603c
chore: update cell output ard-002/composition
redeboer Jun 4, 2021
4ef8516
chore: update cell output ard-002/expr
redeboer Jun 4, 2021
7148cb4
chore: update cell output ard-002/function
redeboer Jun 4, 2021
3c774ea
fix: avoid running ADR-002 notebooks
redeboer Jun 4, 2021
6754441
chore: freeze TR-000 notebook output
redeboer Jun 4, 2021
03dd4f0
chore: freeze TR-001 notebook output
redeboer Jun 4, 2021
86387c5
chore: freeze TR-002 notebook output
redeboer Jun 4, 2021
565eebc
fix: install tensorflow in sympy notebook
redeboer Jun 4, 2021
bb3f967
ci: check if changed notebooks still work
redeboer Jun 4, 2021
7d8af03
fix: rename notebook test workflow
redeboer Jun 4, 2021
6ed79e6
fix: do not use .constraints file
redeboer Jun 4, 2021
8498d46
fix: add jupyter to test requirements
redeboer Jun 4, 2021
4450ad4
fix: install graphviz in test workflow
redeboer Jun 4, 2021
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3 changes: 3 additions & 0 deletions .cspell.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,7 @@
"matplotlib",
"numpy",
"pylint",
"pytest",
"qrules",
"sympify",
"sympy",
Expand All @@ -89,8 +90,10 @@
"getsource",
"graphviz",
"hasattr",
"ipynb",
"ipython",
"isort",
"jaxlib",
"kernelspec",
"lambdifier",
"linkcheck",
Expand Down
34 changes: 34 additions & 0 deletions .github/workflows/ci-tests.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
name: pytest-notebook

on:
push:
branches:
- main
- epic/*
pull_request:
branches:
- main
- epic/*

jobs:
pytest:
name: Test modified notebooks
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-20.04]
python-version: [3.7]
steps:
- uses: actions/checkout@master
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@master
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install .[test]
sudo apt-get -y install graphviz
- name: Run notebooks with pytest (diff only)
run:
pytest $(git diff --name-only origin/$GITHUB_BASE_REF | grep ipynb)
212 changes: 118 additions & 94 deletions docs/adr/001/operators.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -7,14 +7,21 @@
"jupyter": {
"source_hidden": true
},
"slideshow": {
"slide_type": "skip"
},
"tags": [
"remove-cell"
]
},
"outputs": [],
"source": [
"%%capture\n",
"%config Completer.use_jedi = False\n",
"%config InlineBackend.figure_formats = ['svg']"
"%config InlineBackend.figure_formats = ['svg']\n",
"import os\n",
"\n",
"STATIC_WEB_PAGE = {\"EXECUTE_NB\", \"READTHEDOCS\"}.intersection(os.environ)"
]
},
{
Expand All @@ -24,6 +31,23 @@
"# Python `operator` library"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"jupyter": {
"source_hidden": true
},
"tags": [
"hide-cell"
]
},
"outputs": [],
"source": [
"%%sh\n",
"pip install expertsystem==0.6.10 graphviz==0.16 > /dev/null"
]
},
{
"cell_type": "markdown",
"metadata": {},
Expand All @@ -49,17 +73,22 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"keep_output"
]
"tags": []
},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"Propagating quantum numbers: 100%|██████████| 24/24 [00:00<00:00, 102.35it/s]\n"
]
"data": {
"application/vnd.jupyter.widget-view+json": {
"model_id": "c7846d1422964a3a81627a061844c1b8",
"version_major": 2,
"version_minor": 0
},
"text/plain": [
"Propagating quantum numbers: 0%| | 0/24 [00:00<?, ?it/s]"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
Expand Down Expand Up @@ -88,9 +117,7 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"tags": [
"keep_output"
]
"tags": []
},
"outputs": [
{
Expand All @@ -102,128 +129,128 @@
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"execution_count": null,
Expand All @@ -235,17 +262,15 @@
"import graphviz\n",
"\n",
"graphs = result.collapse_graphs()\n",
"dot = es.io.asdot(graphs)\n",
"dot = es.io.convert_to_dot(graphs)\n",
"graphviz.Source(dot)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
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"keep_output"
]
"tags": []
},
"outputs": [
{
Expand Down Expand Up @@ -297,9 +322,7 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
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"keep_output"
]
"tags": []
},
"outputs": [
{
Expand Down Expand Up @@ -516,6 +539,7 @@
}
],
"metadata": {
"keep_output": true,
"kernelspec": {
"display_name": "Python 3",
"language": "python",
Expand All @@ -531,7 +555,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.8"
"version": "3.8.10"
}
},
"nbformat": 4,
Expand Down