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Interpretation of proteomics identification results
Highly adaptable common interface for proteomics search and de novo engines
Open source Java library for computational proteomics
Compomics github website.
Protein quantification based on reporter ions
Java API for MS/MS search results by Mascot (Matrix Science).
Search engine independent rescoring of PSMs by using predicted spectrum intensities.
COSS: CompOmics Spectral Searching
Thermo RAW file parser that runs on Linux with mono
Graphical user interface for de novo sequencing of tandem mass spectra
MS2PIP: MS2 Peak Intensity Prediction
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Sparklines for java tables
Graphical user interface for the ThermoRawFileParser
Cell Migration Invasion Storage System.
A lims system to automate and expedite proteomics data management, processing and analysis.
Library to read and write ms2 spectrum file
Sequence conservation of protein on 3D structure.
Tool that combines cross-link database searching tools
Visualization of conformational proteomics data.
Java implementation of the PSI-MS Transitions Markup Language (TraML) specification.
Small Python scripts developed in the CompOmics group
Pipeline to bring peptdie quantification in Pride using moFF
Issue tracker for the beta release of PeptideShaker 2.0
visualisation tool for proteins
Python script to annotate MS2 spectra from MHGF file.
Enable protein summarisation and quantitation in Galaxy-P
Next-generation visualization of protein consensus sequences by iceLogo.