Computational Omics and Systems Biology Group

MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

Open-source java library for computational proteomics

Sequence conservation of protein on 3D structure.

Compomics github website.

Interpretation of proteomics identification results

MS²PIP: MS² Peak Intensity Prediction

Java front end to the ontology lookup service (OLS)

Graphical user interface for proteomics identification search engines

CompOmics Spectral Similarity Search

Library to read and write ms2 spectrum file

Cell Migration Invasion Storage System.

A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file

A lims system to automate and expedite proteomics data management, processing and analysis.

Small Python scripts developed in the CompOmics group

Java based parser for OMSSA OMX files

Graphical user interface for de novo sequencing of tandem mass spectra

Protein quantification based on reporter ions

Sparklines for java tables

Server application for MS2PIPc using Flask

An algorithm to identify cross-linked peptides

Uniform annotation of identified spectra.

Next-generation visualization of protein consensus sequences by iceLogo.

Pipeline to bring peptdie quantification in Pride using moFF

A graphical user interface for the Modest Feature Finding algorithm (moFF)

Java implementation of the PSI-MS Transitions Markup Language (TraML) specification.

Predicting peptide signatures for targeted proteomics.