Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

compomics.github.io Public
Compomics github website.

SCSS 0 MIT 1 0 0 Updated Aug 16, 2022
compomics-utilities Public
Open source Java library for computational proteomics

Java 25 17 3 0 Updated Aug 16, 2022
peptide-shaker Public
Interpretation of proteomics identification results

Java 31 21 28 (7 issues need help) 0 Updated Aug 16, 2022
psm_utils Public
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

Python 1 Apache-2.0 0 1 2 Updated Aug 11, 2022
ms2rescore Public
Sensitive PSM rescoring with predicted MS² peak intensities using MS²PIP, DeepLC, and Percolator.

Python 7 Apache-2.0 5 12 2 Updated Aug 9, 2022
ThermoRawFileParser Public
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

C# 101 Apache-2.0 36 19 0 Updated Aug 5, 2022
searchgui Public
Highly adaptable common interface for proteomics search and de novo engines

Java 24 17 9 (5 issues need help) 0 Updated Jul 26, 2022
DeepLC Public
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

Python 27 Apache-2.0 14 1 0 Updated Jul 23, 2022
colims Public
A lims system to automate and expedite proteomics data management, processing and analysis.

APL 4 1 0 7 Updated Jul 15, 2022
tabloidProteome Public

HTML 1 Apache-2.0 0 0 2 Updated Jul 15, 2022

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