Pinned

1. ThermoRawFileParser ThermoRawFileParser Public

   Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

   C# 168 48

2. DeepLC DeepLC Public

   DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

   Python 46 18

3. ms2rescore ms2rescore Public

   Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

   Python 38 15

4. compomics-utilities compomics-utilities Public

   Open source Java library for computational proteomics

   Java 28 16

5. peptide-shaker peptide-shaker Public

   Interpretation of proteomics identification results

   Java 46 19

6. searchgui searchgui Public

   Highly adaptable common interface for proteomics search and de novo engines

   Java 38 16