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edited Potts Section
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CompuCell3D committed Jul 7, 2018
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Expand Up @@ -35,11 +35,15 @@ long the simulation lasts in MCS. After executing this number of steps,
CompuCell can run simulation at zero temperature for an additional
period. In our case it will run for ``<Anneal>10</Anneal>`` extra steps.
``FluctuationAmplitude`` parameter determines intrinsic fluctuation or
motility of cell membrane. **Fluctuation amplitude is a temperature
parameter in classical GGH model formulation. We have decided to use
FluctuationAmplitude term instead of temperature because using word
“temperature” to describe intrinsic motility of cell membrane was quite
confusing.**
motility of cell membrane.

.. note::

``FluctuationAmplitude`` is a ``Temperature``
parameter in classical GGH model formulation. We have decided to use
``FluctuationAmplitude`` term instead of temperature because using word
``Temperature`` to describe intrinsic motility of cell membrane was quite
confusing.

In the above example, fluctuation amplitude applies to all cells in the
simulation. To define fluctuation amplitude separately for each cell
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