Computational Plant Science Lab

Lab repository

plantit Public
high-throughput phenotyping in the browser

Vue 7 BSD-3-Clause 0 47 (2 issues need help) 11 Updated Aug 16, 2022
DIRTmu Public
Automatic root hair extraction from microscopy images

Python 1 BSD-3-Clause 1 0 0 Updated Jul 12, 2022
SMART Public
Extract geometric traits from top-view images of plants.

Python 6 BSD-3-Clause 0 3 1 Updated Jul 11, 2022
DIRT Public
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

Python 20 10 1 1 Updated Jul 2, 2022
3D_model_traits_demo Public
Computation of root phenes from 3D point clouds.

Python 3 1 0 0 Updated May 19, 2022
pycyapi Public
Python client for the CyVerse Discovery Environment (Terrain) API

Python 0 0 2 0 Updated May 10, 2022
cactice Public
computing agricultural crop lattices

Jupyter Notebook 0 0 1 0 Updated Apr 27, 2022
3D_model_reconstruction_demo Public
Implementation of the 3D reconstruction pipeline optimized for plant branching structures.

C 9 GPL-3.0 1 2 0 Updated Feb 28, 2022
DIRT-storage Public
Automatic estimation of storage root length, diameter and volume.

Python 1 0 0 0 Updated Feb 26, 2022
plantit-example-hello-world Public
A canonical example workflow.

1 1 0 0 Updated Feb 22, 2022

Pinned