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Computational Plant Science Lab

Lab repository


  1. DIRT Public

    Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

    Python 20 10

  2. Implementation of the 3D reconstruction pipeline optimized for plant branching structures.

    C 9 1

  3. plantit Public

    high-throughput phenotyping in the browser

    Vue 7

  4. SMART Public

    Extract geometric traits from top-view images of plants.

    Python 6

  5. DIRTmu Public

    Automatic root hair extraction from microscopy images

    Python 1 1


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