Computational Plant Science Lab

Repositories

• plantit

  Phenomics-as-a-Service software for accessible, reproducible plant science.
  Vue BSD-3-Clause 0 1 0 1 Updated Jun 6, 2020

• plantit-clusterside

  Workflow manager for PlantIT.
  Python BSD-3-Clause 0 2 1 0 Updated Jun 5, 2020

• plantit-logging

  Logging services for PlantIT.
  Shell 0 1 0 0 Updated May 4, 2020

• icommands-benchmark

  iRODS iCommands upload speed testing.
  Shell 0 0 0 0 Updated Mar 7, 2020

• irods_python_client

  Python port of the irods icommands.
  Python MIT 1 1 0 0 Updated Feb 29, 2020

• raspberry_pi_cluster

  raspberry pi cluster MPI and step motor control
  Python 0 0 0 0 Updated Jan 7, 2020

• 3D_model_traits_demo

  Compute the traits of 3D root models
  Python 0 0 0 0 Updated Jan 7, 2020

• 3D_model_reconstruction_demo

  Reconstruct 3d root model from image sets
  C GPL-3.0 0 0 0 0 Updated Jan 7, 2020

• 3D_model_reconstruction_workflow
  Python 0 0 0 0 Updated Jun 27, 2019

• plant_image_analysis
  Python 0 0 0 0 Updated Jun 27, 2019

• image_preprocess
  Python 0 0 0 0 Updated Jun 25, 2019

• plantit-cookiecutter

  A cookiecutter template for creating workflows for Plant IT.
  Python 0 1 0 0 Updated Jun 25, 2019

• hairyroots_workflow
  Python 0 0 0 0 Updated Jun 25, 2019

• DIRT

  Digital Imaging of Root Traits
  Python 10 14 1 0 Updated Jun 21, 2019

• Example-Workflow

  An example workflow for PlantIT
  Python 0 0 0 0 Updated Feb 27, 2019

• irods_java_client

  Java port of icommands.
  Java 0 0 0 0 Updated Dec 7, 2018

• FiberWalk

  The implementation of the Fiber walk, which is a self avoiding random walk model including lateral expansion
  Python 2 6 0 0 Updated Dec 18, 2016