Gotran:
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provides a Python interface to declare arbitrary ODEs.
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provides an interface for generating CUDA/C/C++/OpenCL/Julia/Python/Matlab code for a number of functions including the right hand side and symbolic generation of a Jacobian.
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is intentionally lightweight, and could be interfaced by other Python libraries needing functionalities to abstract a general ODE.
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depends on NumPy, and on SymPy. See further instructions in INSTALL
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can load models from external ODE description files such as CellML
You can install gotran through pip
python -m pip install gotran
or if you want to work with the latest version you can install the developement version by either cloning the repository and run
python -m pip install git+https://github.com/ComputationalPhysiology/gotran.git
Documentation can be found here: http://computationalphysiology.github.io/gotran/
Source code can be found at https://github.com/ComputationalPhysiology/gotran.
gotran is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
gotran is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with gotran. If not, see http://www.gnu.org/licenses/.
Gotran is developed by Johan Hake. The version of gotran found in this repository is maintained by Henrik Finsberg and Kristian Hustad.