Test examples run without failure #224
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name: Test examples run without failure | |
on: | |
push: | |
branches: | |
- '**' | |
tags: | |
- '**' | |
pull_request: | |
branches: | |
- '**' | |
schedule: | |
- cron: "0 2 * * 5" | |
jobs: | |
tests: | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 40 | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10'] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
submodules: recursive | |
- name: Set up python3 ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies and extension module | |
run: | | |
set -x | |
sudo apt-get update -qy | |
sudo apt-get install -y python3-dev python3-venv libfftw3-dev libopenblas-dev | |
python3 -m venv venv | |
source venv/bin/activate | |
python3 -m pip install --upgrade pip | |
python3 -m pip install flit numpy pip-tools setuptools wheel | |
sudo apt-get install libhdf5-dev libnetcdf-dev | |
python3 -m pip install -v .[test] | |
# Check that NetCDF install was not overriden | |
python3 .check_netcdf_capabilities.py no | |
python3 .check_mufft_capabilities.py no | |
- name: Install extension module | |
run: | | |
source venv/bin/activate | |
python3 -m pip install .[test] | |
- name: Test example files | |
run: | | |
source venv/bin/activate | |
python3 -m pip install jupytext | |
python3 -m pip list | |
cd docs/examples | |
for f in *.ipynb | |
do | |
jupytext --check pytest --warn-only $f | |
done | |
for f in *.py | |
do | |
jupytext --check pytest --warn-only $f | |
done |