Test examples run without failure #225

	name: Test examples run without failure

	on:
	push:
	branches:
	- '**'
	tags:
	- '**'
	pull_request:
	branches:
	- '**'
	schedule:
	- cron: "0 2 * * 5"

	jobs:
	tests:
	runs-on: ubuntu-22.04
	timeout-minutes: 40

	strategy:
	matrix:
	python-version: ['3.8', '3.9', '3.10']

	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	submodules: recursive

	- name: Set up python3 ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies and extension module
	run: \|
	set -x
	sudo apt-get update -qy
	sudo apt-get install -y python3-dev python3-venv libfftw3-dev libopenblas-dev
	python3 -m venv venv
	source venv/bin/activate
	python3 -m pip install --upgrade pip
	python3 -m pip install flit numpy pip-tools setuptools wheel
	sudo apt-get install libhdf5-dev libnetcdf-dev
	python3 -m pip install -v .[test]
	# Check that NetCDF install was not overriden
	python3 .check_netcdf_capabilities.py no
	python3 .check_mufft_capabilities.py no

	- name: Install extension module
	run: \|
	source venv/bin/activate
	python3 -m pip install .[test]

	- name: Test example files
	run: \|
	source venv/bin/activate
	python3 -m pip install jupytext
	python3 -m pip list
	cd docs/examples
	for f in *.ipynb
	do
	jupytext --check pytest --warn-only $f
	done

	for f in *.py
	do
	jupytext --check pytest --warn-only $f
	done

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