Test code functionality #256
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| name: Test code functionality | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| tags: | |
| - '**' | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: | |
| - cron: "0 2 * * 5" | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 90 | |
| strategy: | |
| matrix: | |
| mpi: [ 'yes', 'no' ] | |
| python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ] | |
| mpi4py-version: [ 3.1.5 ] | |
| netcdf4-python-version: [ 1.6.2 ] | |
| muspectre-version: [ 0.26.4 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: recursive | |
| - name: Set up python3 ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies and extension module | |
| run: | | |
| set -x | |
| sudo apt-get update -qy | |
| sudo apt-get install -y python3-dev python3-venv libfftw3-dev libopenblas-dev | |
| python3 -m venv venv | |
| source venv/bin/activate | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install flit numpy pip-tools setuptools wheel | |
| if [ "${{ matrix.mpi }}" == "yes" ]; then | |
| # We now need to recompile some modules to link with native MPI | |
| sudo apt-get install openmpi-bin libopenmpi-dev libfftw3-mpi-dev libhdf5-mpi-dev libpnetcdf-dev libnetcdf-pnetcdf-dev | |
| # Install mpi4py first (because netCDF4 depends on it) | |
| export NETCDF4_DIR=/usr/lib/x86_64-linux-gnu/netcdf/pnetcdf | |
| export CC=mpicc | |
| python3 -m pip install -v --no-binary mpi4py mpi4py==${{ matrix.mpi4py-version }} | |
| else | |
| sudo apt-get install libhdf5-dev libnetcdf-dev | |
| fi | |
| python3 -m pip install -v cython | |
| python3 -m pip install -v --no-build-isolation --no-binary netCDF4 netCDF4==${{ matrix.netcdf4-python-version }} | |
| # We need to force compilation of muSpectre; otherwise it will download a binary wheel which has no FFTW | |
| # support, but we need this for the half-complex tests | |
| python3 -m pip install -v --no-binary muSpectre muSpectre==${{ matrix.muspectre-version }} | |
| python3 -m pip install -v .[test] | |
| # Check that NetCDF install was not overriden | |
| python3 .check_netcdf_capabilities.py ${{ matrix.mpi }} | |
| python3 .check_mufft_capabilities.py ${{ matrix.mpi }} | |
| - name: Test with pytest | |
| run: | | |
| source venv/bin/activate | |
| if [ "${{ matrix.mpi }}" == "yes" ]; then | |
| python3 run-tests.py --no-build --verbose --full-trace | |
| else | |
| python3 -m pytest --verbose --full-trace -s | |
| fi |