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1. apple apple Public

   Code pertinent to processing untargeted metabolomics data and integrating with SNP array data to see significant associations and visualize results.

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2. MS2extract MS2extract Public

   R package to create in-house MS/MS compound libraries

   R 5

3. tomato-pig-microbiome tomato-pig-microbiome Public

   Whole genome sequencing analysis of gut microbiome of pigs consuming control or tomato containing diets.

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4. tomato-liver-omics tomato-liver-omics Public

   Untargeted metabolomics code for analysis from Dzakovich et al. of livers of mice fed control, red, or tangerine tomato containing diets.

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5. carotenoid-analysis carotenoid-analysis Public

   Tools to aid in carotenoid analysis

6. metabolomics-tools metabolomics-tools Public

   A compilation of code helpful in filtering, assessing data quality, and conducting first pass metabolomics analysis.

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