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  1. apple apple Public

    Code pertinent to processing untargeted metabolomics data and integrating with SNP array data to see significant associations and visualize results.

    Rich Text Format

  2. MS2extract MS2extract Public

    R package to create in-house MS/MS compound libraries

    R 5

  3. tomato-pig-microbiome tomato-pig-microbiome Public

    Whole genome sequencing analysis of gut microbiome of pigs consuming control or tomato containing diets.

    HTML 1

  4. tomato-liver-omics tomato-liver-omics Public

    Untargeted metabolomics code for analysis from Dzakovich et al. of livers of mice fed control, red, or tangerine tomato containing diets.

    HTML 1

  5. carotenoid-analysis carotenoid-analysis Public

    Tools to aid in carotenoid analysis

  6. metabolomics-tools metabolomics-tools Public

    A compilation of code helpful in filtering, assessing data quality, and conducting first pass metabolomics analysis.

    HTML 1

Repositories

Showing 10 of 11 repositories
  • ufrgs-metab Public

    Source material for a short course on metabolomics taught by Jessica Cooperstone in May 2024 at UFRGS, Brazil

    HTML 0 0 0 0 Updated Apr 22, 2024
  • MS2extract Public

    R package to create in-house MS/MS compound libraries

    R 5 0 0 0 Updated Apr 22, 2024
  • PhenolicsDB Public

    PhenolicsDB: phenolics MS/MS (LC-ESI-QTOF) database repository

    R 1 CC-BY-4.0 0 0 0 Updated Feb 3, 2024
  • tomato-pig-microbiome Public

    Whole genome sequencing analysis of gut microbiome of pigs consuming control or tomato containing diets.

    HTML 0 1 0 0 Updated Sep 5, 2023
  • apple_phytochemicals Public

    This repository host the document to explore apple phytochemicals detected by untargeted metabolomics

    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 29, 2023
  • HTML 0 0 0 0 Updated Jul 20, 2023
  • metabolomics-tools Public

    A compilation of code helpful in filtering, assessing data quality, and conducting first pass metabolomics analysis.

    HTML 1 0 0 0 Updated Jun 26, 2023
  • tomato-liver-omics Public

    Untargeted metabolomics code for analysis from Dzakovich et al. of livers of mice fed control, red, or tangerine tomato containing diets.

    HTML 0 1 0 1 Updated Apr 25, 2023
  • carotenoid-analysis Public

    Tools to aid in carotenoid analysis

    0 0 0 0 Updated Sep 6, 2022
  • apple Public

    Code pertinent to processing untargeted metabolomics data and integrating with SNP array data to see significant associations and visualize results.

    Rich Text Format 0 0 0 0 Updated Oct 7, 2021

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