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  1. phast phast Public

    PHAST

    C 66 25

  2. LINSIGHT LINSIGHT Public

    C++ 24 11

  3. arg-selection arg-selection Public

    ARG-based inference of selection using deep learning

    Python 16 3

  4. argweaver argweaver Public

    Forked from mjhubisz/argweaver

    Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

    C++ 13 3

  5. argweaver-d-analysis argweaver-d-analysis Public

    Scripts for Hubisz et al 2019 "Mapping gene flow between ancient hominins..."

    R 8 2

  6. RPHAST RPHAST Public

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    C 8 3

Repositories

Showing 10 of 19 repositories
  • FitCons2 Public
    CshlSiepelLab/FitCons2’s past year of commit activity
    C++ 1 BSD-2-Clause 1 1 0 Updated Jul 3, 2024
  • DENR Public

    Select the most actively transcribed transcript model using PRO-seq

    CshlSiepelLab/DENR’s past year of commit activity
    R 2 MIT 5 0 1 Updated Jun 26, 2024
  • LASSIE Public
    CshlSiepelLab/LASSIE’s past year of commit activity
    Python 2 BSD-2-Clause 1 0 0 Updated May 23, 2024
  • LINSIGHT Public
    CshlSiepelLab/LINSIGHT’s past year of commit activity
    C++ 24 BSD-2-Clause 11 1 0 Updated May 23, 2024
  • bat_genome_analysis Public
    CshlSiepelLab/bat_genome_analysis’s past year of commit activity
    Python 3 0 0 0 Updated Feb 11, 2024
  • arg-selection Public

    ARG-based inference of selection using deep learning

    CshlSiepelLab/arg-selection’s past year of commit activity
    Python 16 3 1 0 Updated Aug 31, 2023
  • phast Public

    PHAST

    CshlSiepelLab/phast’s past year of commit activity
    C 66 25 20 3 Updated Aug 29, 2023
  • argweaver Public Forked from mjhubisz/argweaver

    Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

    CshlSiepelLab/argweaver’s past year of commit activity
    C++ 13 MIT 19 7 0 Updated May 1, 2023
  • RPHAST Public

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    CshlSiepelLab/RPHAST’s past year of commit activity
    C 8 3 3 1 Updated Apr 25, 2023
  • SimPol Public
    CshlSiepelLab/SimPol’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Apr 18, 2023
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