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@CyCelsLab

Cytoskeleton and Cell Shape (CyCelS)

Self-Organization lab studying the role of collective mechanics and coupling to reaction networks that determine cell shape and division. PI: Chaitanya Athale

Popular repositories

  1. DICOT_cmd DICOT_cmd Public

    Command line DIC Object Tracking (DICOT) code written inMATLAB to analyze DIC image time-series.

    MATLAB 1 2

  2. DICOT DICOT Public

    MATLAB 1 2

  3. 3DPFM 3DPFM Public

    Forked from ykjawale/3DPFM

    3D printed focussing mechanism (3DPFM) for portable ball-lens microscope

  4. IISER_Project IISER_Project Public

    Forked from AniketRavan/IISER_Project

    Cell shape model

    MATLAB

  5. bactMidcell bactMidcell Public

    Bacterial mid-cell detection and blob analysis using ImageJ (macro).

  6. cytosimAsterPatternFormation cytosimAsterPatternFormation Public

    Using the public cytoskeleton-motor mechanics simulation engine, this simulation parameter file illustrates conditions under which asters form "mechanoids" or polygonal cells in space.

Repositories

Showing 10 of 13 repositories
  • bacterialsizeScaling Public

    Code relating to the scaling of bacterial cell size

    MATLAB 0 GPL-3.0 0 0 0 Updated Mar 18, 2024
  • diameterJ-modified Public

    Modifying the FIJI installation of DIAMETERJ to remove errors that was preventing its use

    ImageJ Macro 0 0 0 0 Updated Jun 7, 2023
  • Spindle-Modeling-budding-yeast Public

    In this project the motility dynamics of spindle pole body, nucleus and spindle is modeled during the cell cycle

    0 0 0 0 Updated Aug 23, 2022
  • MT-beating Public

    Simulating single pinned MT in 2D

    0 0 0 0 Updated Jul 6, 2022
  • AsterQuant Public

    Multi aster system quantitative analysis using voronoi tessellation

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 14, 2022
  • DICOT_cmd Public

    Command line DIC Object Tracking (DICOT) code written inMATLAB to analyze DIC image time-series.

    MATLAB 1 GPL-3.0 2 0 0 Updated Jan 11, 2021
  • DICOT Public
    MATLAB 1 GPL-3.0 2 0 1 Updated Jan 11, 2021
  • AMTraK Public
    0 GPL-3.0 0 0 0 Updated Sep 20, 2020
  • Multi-aster-swaming Public
    C++ 0 0 0 0 Updated Jul 25, 2020
  • cytosimAsterPatternFormation Public

    Using the public cytoskeleton-motor mechanics simulation engine, this simulation parameter file illustrates conditions under which asters form "mechanoids" or polygonal cells in space.

    0 0 0 0 Updated Apr 27, 2020
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