Merge branch 'ParDirCollapse' of /home/kacper/Projects/DGtal with con…

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DGtal-team · Dec 23, 2016 · b985337 · b985337
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diff --git a/.kdev4/DGtal.kdev4 b/.kdev4/DGtal.kdev4
@@ -0,0 +1,80 @@
+[Buildset]
+BuildItems=@Variant(\x00\x00\x00\t\x00\x00\x00\x00\x01\x00\x00\x00\x0b\x00\x00\x00\x00\x01\x00\x00\x00\n\x00D\x00G\x00t\x00a\x00l)
+
+[CMake]
+Build Directory Count=1
+Current Build Directory Index=0
+ProjectRootRelative=./
+
+[CMake][CMake Build Directory 0]
+Build Directory Path=file:///home/kacper/projects/DGtal/build
+Build Type=Debug
+CMake Binary=file:///usr/bin/cmake
+Environment Profile=
+Extra Arguments=
+Install Directory=file:///usr/local
+
+[Defines And Includes][Compiler]
+Name=GCC
+Path=gcc
+Type=GCC
+
+[Launch]
+Launch Configurations=Launch Configuration 0,Launch Configuration 1,Launch Configuration 2
+
+[Launch][Launch Configuration 0]
+Configured Launch Modes=execute
+Configured Launchers=nativeAppLauncher
+Name=testParametricCurves3D
+Type=Native Application
+
+[Launch][Launch Configuration 0][Data]
+Arguments=
+Dependencies=@Variant(\x00\x00\x00\t\x00\x00\x00\x00\x00)
+Dependency Action=Nothing
+EnvironmentGroup=default
+Executable=file:///home/kacper/projects/DGtal/build/tests/curves/testParametricCurves3D
+External Terminal=konsole --noclose --workdir %workdir -e %exe
+Project Target=DGtal,tests,geometry,curves,testLambdaMST3D
+Use External Terminal=true
+Working Directory=file:///home/kacper/projects/DGtal/build/tests/curves/
+isExecutable=false
+
+[Launch][Launch Configuration 1]
+Configured Launch Modes=execute
+Configured Launchers=nativeAppLauncher
+Name=lmst2D_test
+Type=Native Application
+
+[Launch][Launch Configuration 1][Data]
+Arguments=
+Dependencies=@Variant(\x00\x00\x00\t\x00\x00\x00\x00\x00)
+Dependency Action=Nothing
+EnvironmentGroup=
+Executable=file:///home/kacper/projects/DGtal/build/tests/geometry/curves/estimation/testLambdaMST2D
+External Terminal=konsole --noclose --workdir %workdir -e %exe
+Project Target=
+Use External Terminal=true
+Working Directory=
+isExecutable=true
+
+[Launch][Launch Configuration 2]
+Configured Launch Modes=execute
+Configured Launchers=nativeAppLauncher
+Name=lmst3D_test
+Type=Native Application
+
+[Launch][Launch Configuration 2][Data]
+Arguments=
+Dependencies=@Variant(\x00\x00\x00\t\x00\x00\x00\x00\x00)
+Dependency Action=Nothing
+EnvironmentGroup=
+Executable=file:///home/kacper/projects/DGtal/build/tests/geometry/curves/estimation/testLambdaMST3D
+External Terminal=konsole --noclose --workdir %workdir -e %exe
+Project Target=
+Use External Terminal=true
+Working Directory=
+isExecutable=true
+
+[Project]
+VersionControlSupport=kdevgit
diff --git a/.travis.yml b/.travis.yml
diff --git a/.travis/dgtal_rsa.enc b/.travis/dgtal_rsa.enc
diff --git a/AUTHORS b/AUTHORS
diff --git a/CMakeLists.txt b/CMakeLists.txt
diff --git a/CTestConfig.cmake b/CTestConfig.cmake
diff --git a/ChangeLog.md b/ChangeLog.md
diff --git a/DGtal.kdev4 b/DGtal.kdev4
@@ -0,0 +1,3 @@
+[Project]
+Manager=KDevCMakeManager
+Name=DGtal
diff --git a/LICENSE b/LICENSE
diff --git a/README.md b/README.md
diff --git a/appveyor.yml b/appveyor.yml
diff --git a/cmake/BuildExamples.cmake b/cmake/BuildExamples.cmake
diff --git a/cmake/CheckCPP11.cmake b/cmake/CheckCPP11.cmake
diff --git a/cmake/CheckCoverage.cmake b/cmake/CheckCoverage.cmake
diff --git a/cmake/CheckDGtalDependencies.cmake b/cmake/CheckDGtalDependencies.cmake
diff --git a/cmake/CheckDGtalOptionalDependencies.cmake b/cmake/CheckDGtalOptionalDependencies.cmake
diff --git a/cmake/Common.cmake b/cmake/Common.cmake
diff --git a/cmake/CpackCtest.cmake b/cmake/CpackCtest.cmake
diff --git a/cmake/DGtalConfig.cmake.in b/cmake/DGtalConfig.cmake.in
diff --git a/cmake/DGtalConfigGenerator.cmake b/cmake/DGtalConfigGenerator.cmake
diff --git a/cmake/DGtalConfigVersion.cmake.in b/cmake/DGtalConfigVersion.cmake.in
diff --git a/cmake/FindBenchmark.cmake b/cmake/FindBenchmark.cmake
diff --git a/cmake/FindCOIN3D.cmake b/cmake/FindCOIN3D.cmake
diff --git a/cmake/FindCairo.cmake b/cmake/FindCairo.cmake
diff --git a/cmake/FindEigen3.cmake b/cmake/FindEigen3.cmake
diff --git a/cmake/FindGMP.cmake b/cmake/FindGMP.cmake
diff --git a/cmake/FindMagick.cmake b/cmake/FindMagick.cmake
diff --git a/cmake/FindPatate.cmake b/cmake/FindPatate.cmake
diff --git a/cmake/FindQGLVIEWER.cmake b/cmake/FindQGLVIEWER.cmake
diff --git a/cmake/FindSOQT.cmake b/cmake/FindSOQT.cmake
diff --git a/cmake/GeneratorSpecific.cmake b/cmake/GeneratorSpecific.cmake
diff --git a/cmake/Install.cmake b/cmake/Install.cmake
diff --git a/cmake/OSDependentSettings.cmake b/cmake/OSDependentSettings.cmake
diff --git a/cmake/TargetDistclean.cmake b/cmake/TargetDistclean.cmake
diff --git a/cmake/TargetDoxygenDoc.cmake b/cmake/TargetDoxygenDoc.cmake
diff --git a/cmake/TargetDoxygenDox.cmake b/cmake/TargetDoxygenDox.cmake
diff --git a/cmake/TargetUninstall.cmake.in b/cmake/TargetUninstall.cmake.in
diff --git a/cmake/doxygen.cmake b/cmake/doxygen.cmake
diff --git a/cmake/src/ITKcpp11Bug/CMakeLists.txt b/cmake/src/ITKcpp11Bug/CMakeLists.txt
diff --git a/cmake/src/ITKcpp11Bug/itkcpp11.cpp b/cmake/src/ITKcpp11Bug/itkcpp11.cpp
diff --git a/cmake/src/cpp11/array.cpp b/cmake/src/cpp11/array.cpp
@@ -0,0 +1,23 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+#include <iostream>
+#include <array>
+
+int main()
+{
+  std::array<int,5> myarray;
+}
diff --git a/cmake/src/cpp11/auto.cpp b/cmake/src/cpp11/auto.cpp
@@ -0,0 +1,34 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+#include <iostream>
+#include <vector>
+
+using namespace std;
+
+
+int main()
+{
+  auto x = 7;
+  auto s= "blam";
+
+  std::vector<int> t(20);
+
+  for (auto p = t.begin(); p!=t.end(); ++p) 
+    std::cout << *p << "\n";
+
+  return 1;
+}
diff --git a/cmake/src/cpp11/forward_list.cpp b/cmake/src/cpp11/forward_list.cpp
@@ -0,0 +1,25 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+#include <iostream>
+#include <forward_list>
+
+int main()
+{
+  std::forward_list<int> mylist;
+  mylist.push_front (19);
+  mylist.push_front (34);
+}
diff --git a/cmake/src/cpp11/initializer_list.cpp b/cmake/src/cpp11/initializer_list.cpp
@@ -0,0 +1,35 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+#include <iostream>
+
+template<typename T>
+void f(std::initializer_list<T> init)
+{
+  std::cout<<"{";
+  for (const T *p = init.begin (); p != init.end (); ++p)
+    std::cout<<*p<<", ";
+  std::cout<<"}"<<std::endl;
+}
+
+int main()
+{
+  f({1,2,3,4});
+  f({1.1,2.2,3.3,4.4});
+  f({'a','b','c','d'});
+  f({"toto","tata","titi"});
+  return 1;
+}
diff --git a/cmake/src/cpp11/rref-move.cpp b/cmake/src/cpp11/rref-move.cpp
@@ -0,0 +1,58 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+#include <iostream>
+#include <vector>
+
+using namespace std;
+
+struct T {};
+void f( T&& t, int& i ) { i += 1; }
+void f( T& t, int& i )  { i += 2; }
+
+struct U {
+  U( const std::vector<int> & v ) : myV( v ) {
+    former_size = v.size();
+  }
+  U( std::vector<int> && v ) : myV( std::move( v ) ) {
+    former_size = v.size();
+  }
+  int former_size;
+  std::vector<int> myV;
+};
+
+int main()
+{
+  // Checking rvalue reference.
+  int i = 0;
+  T t;
+  f( t, i ); f( T(), i );
+  bool ok1 = ( i == 3 );
+  std::cout << "rvalue reference is " << ( ok1 ? "ok" : "ko" ) << std::endl;
+
+  // initializer list are not in my clang++ 3.0
+  std::vector<int> v;
+  v.push_back( 1 ); v.push_back( 1 );
+  for ( int j = 0; j < 10; ++j ) v.push_back( v.back() + v[ v.size() - 2 ] );
+
+  // Checking std::move
+  U u1( v );
+  std::cout << "u1.former_size=" << u1.former_size << " == u1.size()=" << u1.myV.size() << std::endl;
+  U u2( std::vector<int>( 5 ) );
+  std::cout << "u2.former_size=" << u2.former_size << " != u2.size()=" << u2.myV.size() << std::endl;
+  bool ok2 = u2.former_size == 0;
+  return ( ok1 && ok2 )? 0 : 1;
+}
diff --git a/cmake/src/gmp/gmpstream.cpp b/cmake/src/gmp/gmpstream.cpp
diff --git a/doc/concepts.dot b/doc/concepts.dot
diff --git a/doc/doxy.config.Board.in b/doc/doxy.config.Board.in
diff --git a/doc/doxy.config.dox.in b/doc/doxy.config.dox.in
diff --git a/doc/doxy.config.in b/doc/doxy.config.in
diff --git a/doc/images/0cellsRange.png b/doc/images/0cellsRange.png
diff --git a/doc/images/3dKSSurfaceExtractionExport.pdf b/doc/images/3dKSSurfaceExtractionExport.pdf
diff --git a/doc/images/ArrowsRange.png b/doc/images/ArrowsRange.png
diff --git a/doc/images/ClosedCurveProcessedAsClosed.png b/doc/images/ClosedCurveProcessedAsClosed.png
diff --git a/doc/images/ClosedCurveProcessedAsOpen.png b/doc/images/ClosedCurveProcessedAsOpen.png
diff --git a/doc/images/DisconnectedCurveDecomposition.png b/doc/images/DisconnectedCurveDecomposition.png
diff --git a/doc/images/accflower-R30-r10-k5.png b/doc/images/accflower-R30-r10-k5.png
diff --git a/doc/images/algo1.png b/doc/images/algo1.png
diff --git a/doc/images/angle.png b/doc/images/angle.png
diff --git a/doc/images/backpath.png b/doc/images/backpath.png
diff --git a/doc/images/ball-R30.png b/doc/images/ball-R30.png
diff --git a/doc/images/beetle-10.png b/doc/images/beetle-10.png
diff --git a/doc/images/digital-surface-bfv-al100.png b/doc/images/digital-surface-bfv-al100.png
diff --git a/doc/images/digital-surface-bfv-cat.png b/doc/images/digital-surface-bfv-cat.png
diff --git a/doc/images/digital-surface-bfv-lobster.png b/doc/images/digital-surface-bfv-lobster.png
diff --git a/doc/images/doc-kernel/shapes/accflower001.png b/doc/images/doc-kernel/shapes/accflower001.png
diff --git a/doc/images/doc-kernel/shapes/ellipse001.png b/doc/images/doc-kernel/shapes/ellipse001.png
diff --git a/doc/images/doc-kernel/shapes/flower001.png b/doc/images/doc-kernel/shapes/flower001.png
diff --git a/doc/images/doc-kernel/shapes/square001.png b/doc/images/doc-kernel/shapes/square001.png
diff --git a/doc/images/doc-kernel/shapes/triangle001.png b/doc/images/doc-kernel/shapes/triangle001.png
diff --git a/doc/images/dsl-standard.png b/doc/images/dsl-standard.png
diff --git a/doc/images/ellipse-A30-a10.png b/doc/images/ellipse-A30-a10.png
diff --git a/doc/images/flower-R30-r10-k5.png b/doc/images/flower-R30-r10-k5.png
diff --git a/doc/images/greedy-plane-segmentation-al-150-w1-1.png b/doc/images/greedy-plane-segmentation-al-150-w1-1.png
diff --git a/doc/images/greedy-plane-segmentation-ex2.png b/doc/images/greedy-plane-segmentation-ex2.png
diff --git a/doc/images/hashtree.png b/doc/images/hashtree.png
diff --git a/doc/images/logoDGtal.svg b/doc/images/logoDGtal.svg
diff --git a/doc/images/logo_DGtal.png b/doc/images/logo_DGtal.png
diff --git a/doc/images/lpball-R30-p0.5.png b/doc/images/lpball-R30-p0.5.png
diff --git a/doc/images/lpball-R30-p2.5.png b/doc/images/lpball-R30-p2.5.png
diff --git a/doc/images/metrics/image-ball-0.80000000000000004.png b/doc/images/metrics/image-ball-0.80000000000000004.png
diff --git a/doc/images/metrics/image-ball-1.3999999999999999.png b/doc/images/metrics/image-ball-1.3999999999999999.png
diff --git a/doc/images/metrics/image-ball-1.png b/doc/images/metrics/image-ball-1.png
diff --git a/doc/images/metrics/image-ball-2.png b/doc/images/metrics/image-ball-2.png
diff --git a/doc/images/metrics/image-ball-4.png b/doc/images/metrics/image-ball-4.png
diff --git a/doc/images/metrics/image-ball-43.100000000000001.png b/doc/images/metrics/image-ball-43.100000000000001.png
diff --git a/doc/images/metrics/image-ball-8.png b/doc/images/metrics/image-ball-8.png
diff --git a/doc/images/mpolynomial-crixxi.png b/doc/images/mpolynomial-crixxi.png
diff --git a/doc/images/mpolynomial-durchblick.png b/doc/images/mpolynomial-durchblick.png
diff --git a/doc/images/plant054.png b/doc/images/plant054.png
diff --git a/doc/images/plant075.png b/doc/images/plant075.png
diff --git a/doc/images/segmentComputersGraph.png b/doc/images/segmentComputersGraph.png
diff --git a/doc/images/segmentComputersHierarchy.png b/doc/images/segmentComputersHierarchy.png
diff --git a/doc/images/simpleSet-color.png b/doc/images/simpleSet-color.png
diff --git a/doc/images/simpleSet-grid.png b/doc/images/simpleSet-grid.png
diff --git a/doc/images/simpleSet-paving.png b/doc/images/simpleSet-paving.png
diff --git a/doc/images/simpleSet.png b/doc/images/simpleSet.png
diff --git a/doc/images/square-w30.png b/doc/images/square-w30.png
diff --git a/doc/images/suivi-gordon.fig b/doc/images/suivi-gordon.fig
diff --git a/doc/images/suivi-gordon.png b/doc/images/suivi-gordon.png
diff --git a/doc/images/suivi-parcours-largeur.fig b/doc/images/suivi-parcours-largeur.fig
diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt
diff --git a/examples/ConfigExamples.h.in b/examples/ConfigExamples.h.in
diff --git a/examples/arithmetic/CMakeLists.txt b/examples/arithmetic/CMakeLists.txt
diff --git a/examples/arithmetic/approximation.cpp b/examples/arithmetic/approximation.cpp
diff --git a/examples/arithmetic/convergents-biginteger.cpp b/examples/arithmetic/convergents-biginteger.cpp
diff --git a/examples/arithmetic/convergents.cpp b/examples/arithmetic/convergents.cpp
diff --git a/examples/arithmetic/extended-euclid.cpp b/examples/arithmetic/extended-euclid.cpp
diff --git a/examples/arithmetic/fraction.cpp b/examples/arithmetic/fraction.cpp
diff --git a/examples/arithmetic/lower-integer-convex-hull.cpp b/examples/arithmetic/lower-integer-convex-hull.cpp
diff --git a/examples/arithmetic/pattern.cpp b/examples/arithmetic/pattern.cpp
diff --git a/examples/dec/CMakeLists.txt b/examples/dec/CMakeLists.txt
diff --git a/examples/dec/DECExamplesCommon.h b/examples/dec/DECExamplesCommon.h
diff --git a/examples/dec/exampleDECSurface.cpp b/examples/dec/exampleDECSurface.cpp
diff --git a/examples/dec/exampleDiscreteExteriorCalculusChladni.cpp b/examples/dec/exampleDiscreteExteriorCalculusChladni.cpp
diff --git a/examples/dec/exampleDiscreteExteriorCalculusSolve.cpp b/examples/dec/exampleDiscreteExteriorCalculusSolve.cpp
diff --git a/examples/dec/exampleDiscreteExteriorCalculusUsage.cpp b/examples/dec/exampleDiscreteExteriorCalculusUsage.cpp
diff --git a/examples/dec/examplePropagation.cpp b/examples/dec/examplePropagation.cpp
diff --git a/examples/dec/propagation.gp b/examples/dec/propagation.gp
diff --git a/examples/doc-examples/CMakeLists.txt b/examples/doc-examples/CMakeLists.txt
diff --git a/examples/doc-examples/DGtalCatch.h b/examples/doc-examples/DGtalCatch.h
diff --git a/examples/doc-examples/catch.hpp b/examples/doc-examples/catch.hpp
diff --git a/examples/doc-examples/demo-kernel-1.cpp b/examples/doc-examples/demo-kernel-1.cpp
diff --git a/examples/doc-examples/exampleCatch.cpp b/examples/doc-examples/exampleCatch.cpp
diff --git a/examples/doc-examples/kernelDomain.cpp b/examples/doc-examples/kernelDomain.cpp
diff --git a/examples/doc-examples/labelledMapBestParameters.cpp b/examples/doc-examples/labelledMapBestParameters.cpp
diff --git a/examples/doc-examples/range.cpp b/examples/doc-examples/range.cpp
diff --git a/examples/geometry/CMakeLists.txt b/examples/geometry/CMakeLists.txt
diff --git a/examples/geometry/curves/CMakeLists.txt b/examples/geometry/curves/CMakeLists.txt
diff --git a/examples/geometry/curves/convex-and-concave-parts.cpp b/examples/geometry/curves/convex-and-concave-parts.cpp
diff --git a/examples/geometry/curves/estimation/CMakeLists.txt b/examples/geometry/curves/estimation/CMakeLists.txt
diff --git a/examples/geometry/curves/estimation/exampleCurvature.cpp b/examples/geometry/curves/estimation/exampleCurvature.cpp
diff --git a/examples/geometry/curves/estimation/exampleLMST2D.cpp b/examples/geometry/curves/estimation/exampleLMST2D.cpp
diff --git a/examples/geometry/curves/estimation/exampleLMST3D.cpp b/examples/geometry/curves/estimation/exampleLMST3D.cpp
diff --git a/examples/geometry/curves/exampleArithDSS3d.cpp b/examples/geometry/curves/exampleArithDSS3d.cpp
diff --git a/examples/geometry/curves/exampleArithDSSIterator.cpp b/examples/geometry/curves/exampleArithDSSIterator.cpp
diff --git a/examples/geometry/curves/exampleArithmeticalDSL.cpp b/examples/geometry/curves/exampleArithmeticalDSL.cpp
diff --git a/examples/geometry/curves/exampleArithmeticalDSS.cpp b/examples/geometry/curves/exampleArithmeticalDSS.cpp
diff --git a/examples/geometry/curves/exampleArithmeticalDSSComputer.cpp b/examples/geometry/curves/exampleArithmeticalDSSComputer.cpp
diff --git a/examples/geometry/curves/exampleDSLSubsegment.cpp b/examples/geometry/curves/exampleDSLSubsegment.cpp
diff --git a/examples/geometry/curves/exampleFrechetShortcut.cpp b/examples/geometry/curves/exampleFrechetShortcut.cpp
diff --git a/examples/geometry/curves/exampleGridCurve2d.cpp b/examples/geometry/curves/exampleGridCurve2d.cpp
diff --git a/examples/geometry/curves/exampleGridCurve3d-2.cpp b/examples/geometry/curves/exampleGridCurve3d-2.cpp
diff --git a/examples/geometry/curves/exampleGridCurve3d.cpp b/examples/geometry/curves/exampleGridCurve3d.cpp
diff --git a/examples/geometry/curves/exampleNaive3DDSSComputer.cpp b/examples/geometry/curves/exampleNaive3DDSSComputer.cpp
diff --git a/examples/geometry/curves/exampleStabbingCircleComputer.cpp b/examples/geometry/curves/exampleStabbingCircleComputer.cpp
diff --git a/examples/geometry/curves/exampleStabbingLineComputer.cpp b/examples/geometry/curves/exampleStabbingLineComputer.cpp
diff --git a/examples/geometry/curves/freemanChainDisplay.cpp b/examples/geometry/curves/freemanChainDisplay.cpp
diff --git a/examples/geometry/curves/greedy-dss-decomposition.cpp b/examples/geometry/curves/greedy-dss-decomposition.cpp
diff --git a/examples/geometry/surfaces/CMakeLists.txt b/examples/geometry/surfaces/CMakeLists.txt
diff --git a/examples/geometry/surfaces/dvcm-2d-curvature.cpp b/examples/geometry/surfaces/dvcm-2d-curvature.cpp
diff --git a/examples/geometry/surfaces/dvcm-3d.cpp b/examples/geometry/surfaces/dvcm-3d.cpp
diff --git a/examples/geometry/surfaces/exampleEstimatorFromSurfelFunctors.cpp b/examples/geometry/surfaces/exampleEstimatorFromSurfelFunctors.cpp
diff --git a/examples/geometry/surfaces/exampleIntegralInvariantCurvature2D.cpp b/examples/geometry/surfaces/exampleIntegralInvariantCurvature2D.cpp
diff --git a/examples/geometry/surfaces/exampleIntegralInvariantCurvature3D.cpp b/examples/geometry/surfaces/exampleIntegralInvariantCurvature3D.cpp
diff --git a/examples/geometry/surfaces/greedy-plane-segmentation-ex2.cpp b/examples/geometry/surfaces/greedy-plane-segmentation-ex2.cpp
diff --git a/examples/geometry/surfaces/greedy-plane-segmentation-ex3.cpp b/examples/geometry/surfaces/greedy-plane-segmentation-ex3.cpp
diff --git a/examples/geometry/surfaces/greedy-plane-segmentation.cpp b/examples/geometry/surfaces/greedy-plane-segmentation.cpp
diff --git a/examples/geometry/tools/CMakeLists.txt b/examples/geometry/tools/CMakeLists.txt
diff --git a/examples/geometry/tools/determinant/CMakeLists.txt b/examples/geometry/tools/determinant/CMakeLists.txt
diff --git a/examples/geometry/tools/determinant/exampleInHalfPlane.cpp b/examples/geometry/tools/determinant/exampleInHalfPlane.cpp
diff --git a/examples/geometry/tools/examplePreimage.cpp b/examples/geometry/tools/examplePreimage.cpp
diff --git a/examples/geometry/volumes/CMakeLists.txt b/examples/geometry/volumes/CMakeLists.txt
diff --git a/examples/geometry/volumes/distance/CMakeLists.txt b/examples/geometry/volumes/distance/CMakeLists.txt
diff --git a/examples/geometry/volumes/distance/distancetransform2D.cpp b/examples/geometry/volumes/distance/distancetransform2D.cpp
diff --git a/examples/geometry/volumes/distance/distancetransform3D.cpp b/examples/geometry/volumes/distance/distancetransform3D.cpp
diff --git a/examples/geometry/volumes/distance/exampleFMM2D.cpp b/examples/geometry/volumes/distance/exampleFMM2D.cpp
diff --git a/examples/geometry/volumes/distance/exampleFMM3D.cpp b/examples/geometry/volumes/distance/exampleFMM3D.cpp
diff --git a/examples/geometry/volumes/distance/voronoimap2D.cpp b/examples/geometry/volumes/distance/voronoimap2D.cpp
diff --git a/examples/geometry/volumes/dvcm-2d.cpp b/examples/geometry/volumes/dvcm-2d.cpp
diff --git a/examples/graph/CMakeLists.txt b/examples/graph/CMakeLists.txt
diff --git a/examples/graph/graphTraversal.cpp b/examples/graph/graphTraversal.cpp
diff --git a/examples/graph/volDistanceTraversal.cpp b/examples/graph/volDistanceTraversal.cpp
diff --git a/examples/images/CMakeLists.txt b/examples/images/CMakeLists.txt
diff --git a/examples/images/exampleConstImageAdapter.cpp b/examples/images/exampleConstImageAdapter.cpp
diff --git a/examples/images/exampleImageFactoryFromHDF5.cpp b/examples/images/exampleImageFactoryFromHDF5.cpp
diff --git a/examples/images/exampleRigidtransformation2d.cpp b/examples/images/exampleRigidtransformation2d.cpp
diff --git a/examples/images/exampleRigidtransformation3d.cpp b/examples/images/exampleRigidtransformation3d.cpp
diff --git a/examples/images/exampleTiledImage.cpp b/examples/images/exampleTiledImage.cpp
diff --git a/examples/images/extract2DImagesFrom3D.cpp b/examples/images/extract2DImagesFrom3D.cpp
diff --git a/examples/images/extract2DImagesFrom3DandVisu.cpp b/examples/images/extract2DImagesFrom3DandVisu.cpp
diff --git a/examples/images/extract2DSlicesImagesFrom3D.cpp b/examples/images/extract2DSlicesImagesFrom3D.cpp
diff --git a/examples/images/imageBasicSubsampling.cpp b/examples/images/imageBasicSubsampling.cpp
diff --git a/examples/images/quasiaffinetransform2D.cpp b/examples/images/quasiaffinetransform2D.cpp
@@ -0,0 +1,55 @@
+/**
+ *  This program is free software: you can redistribute it and/or modify
+ *  it under the terms of the GNU Lesser General Public License as
+ *  published by the Free Software Foundation, either version 3 of the
+ *  License, or  (at your option) any later version.
+ *
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License
+ *  along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ **/
+
+/**
+ * @file quasiaffinetransform2D.cpp
+ * @ingroup Examples
+ * @author Kacper Pluta (\c kacper.pluta@esiee.fr )
+ * Laboratoire d'Informatique Gaspard-Monge - LIGM, France
+ *
+ * @date 2014/08/16
+ *
+ * An example file named quasiaffinetransform2D.
+ *
+ * This file is part of the DGtal library.
+ */
+
+///////////////////////////////////////////////////////////////////////////////
+#include <iostream>
+#include "ConfigExamples.h"
+#include "DGtal/helpers/StdDefs.h"
+#include "DGtal/base/Common.h"
+#include "DGtal/images/QuasiAffineTransform2D.h"
+///////////////////////////////////////////////////////////////////////////////
+
+using namespace std;
+using namespace DGtal;
+
+///////////////////////////////////////////////////////////////////////////////
+
+int main( int argc, char** argv )
+{
+  trace.beginBlock ( "Example quasiaffinetransform2D" );
+  trace.info() << "Args:";
+  for ( int i = 0; i < argc; ++i )
+    trace.info() << " " << argv[ i ];
+  trace.info() << endl;
+
+  trace.endBlock();
+  return 0;
+}
+//                                                                           //
+///////////////////////////////////////////////////////////////////////////////
diff --git a/examples/images/raw2HDF5.cpp b/examples/images/raw2HDF5.cpp
diff --git a/examples/io/CMakeLists.txt b/examples/io/CMakeLists.txt
diff --git a/examples/io/boards/CMakeLists.txt b/examples/io/boards/CMakeLists.txt
diff --git a/examples/io/boards/dgtalBoard2D-1-points.cpp b/examples/io/boards/dgtalBoard2D-1-points.cpp
diff --git a/examples/io/boards/dgtalBoard2D-2-sets.cpp b/examples/io/boards/dgtalBoard2D-2-sets.cpp
diff --git a/examples/io/boards/dgtalBoard2D-3-custom-classes.cpp b/examples/io/boards/dgtalBoard2D-3-custom-classes.cpp
diff --git a/examples/io/boards/dgtalBoard2D-3-custom-points.cpp b/examples/io/boards/dgtalBoard2D-3-custom-points.cpp
diff --git a/examples/io/boards/dgtalBoard2D-4-colormaps.cpp b/examples/io/boards/dgtalBoard2D-4-colormaps.cpp
diff --git a/examples/io/boards/dgtalBoard3D-1-points.cpp b/examples/io/boards/dgtalBoard3D-1-points.cpp
diff --git a/examples/io/boards/dgtalBoard3D-2-ks.cpp b/examples/io/boards/dgtalBoard3D-2-ks.cpp
diff --git a/examples/io/boards/dgtalBoard3D-6-clipping.cpp b/examples/io/boards/dgtalBoard3D-6-clipping.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-0-demo-kernel-2.cpp b/examples/io/boards/dgtalBoard3DTo2D-0-demo-kernel-2.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-1-points.cpp b/examples/io/boards/dgtalBoard3DTo2D-1-points.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-2-sets.cpp b/examples/io/boards/dgtalBoard3DTo2D-2-sets.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-2bis-sets.cpp b/examples/io/boards/dgtalBoard3DTo2D-2bis-sets.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-3-objects.cpp b/examples/io/boards/dgtalBoard3DTo2D-3-objects.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-4-modes.cpp b/examples/io/boards/dgtalBoard3DTo2D-4-modes.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-5-custom.cpp b/examples/io/boards/dgtalBoard3DTo2D-5-custom.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-6.cpp b/examples/io/boards/dgtalBoard3DTo2D-6.cpp
diff --git a/examples/io/boards/dgtalBoard3DTo2D-KSCell.cpp b/examples/io/boards/dgtalBoard3DTo2D-KSCell.cpp
diff --git a/examples/io/boards/exampleBezierCurve.cpp b/examples/io/boards/exampleBezierCurve.cpp
diff --git a/examples/io/boards/logoDGtal.cpp b/examples/io/boards/logoDGtal.cpp
diff --git a/examples/io/digitalSetFromPointList.cpp b/examples/io/digitalSetFromPointList.cpp
diff --git a/examples/io/digitalSetFromVol.cpp b/examples/io/digitalSetFromVol.cpp
diff --git a/examples/io/display3DToOFF.cpp b/examples/io/display3DToOFF.cpp
diff --git a/examples/io/meshFromOFF.cpp b/examples/io/meshFromOFF.cpp
diff --git a/examples/io/viewDualSurface.cpp b/examples/io/viewDualSurface.cpp
diff --git a/examples/io/viewers/CMakeLists.txt b/examples/io/viewers/CMakeLists.txt
diff --git a/examples/io/viewers/demo-kernel-2.cpp b/examples/io/viewers/demo-kernel-2.cpp
diff --git a/examples/io/viewers/viewer3D-1-points.cpp b/examples/io/viewers/viewer3D-1-points.cpp
diff --git a/examples/io/viewers/viewer3D-10-interaction.cpp b/examples/io/viewers/viewer3D-10-interaction.cpp
diff --git a/examples/io/viewers/viewer3D-2-sets.cpp b/examples/io/viewers/viewer3D-2-sets.cpp
diff --git a/examples/io/viewers/viewer3D-3-objects.cpp b/examples/io/viewers/viewer3D-3-objects.cpp
diff --git a/examples/io/viewers/viewer3D-4-modes.cpp b/examples/io/viewers/viewer3D-4-modes.cpp
diff --git a/examples/io/viewers/viewer3D-4bis-illustrationMode.cpp b/examples/io/viewers/viewer3D-4bis-illustrationMode.cpp
diff --git a/examples/io/viewers/viewer3D-5-custom.cpp b/examples/io/viewers/viewer3D-5-custom.cpp
diff --git a/examples/io/viewers/viewer3D-6-clipping.cpp b/examples/io/viewers/viewer3D-6-clipping.cpp
diff --git a/examples/io/viewers/viewer3D-7-planes.cpp b/examples/io/viewers/viewer3D-7-planes.cpp
diff --git a/examples/io/viewers/viewer3D-7-stdplane.cpp b/examples/io/viewers/viewer3D-7-stdplane.cpp
diff --git a/examples/io/viewers/viewer3D-7bis-planes.cpp b/examples/io/viewers/viewer3D-7bis-planes.cpp
diff --git a/examples/io/viewers/viewer3D-7bis-stdplane.cpp b/examples/io/viewers/viewer3D-7bis-stdplane.cpp
diff --git a/examples/io/viewers/viewer3D-8-2DSliceImages.cpp b/examples/io/viewers/viewer3D-8-2DSliceImages.cpp
diff --git a/examples/io/viewers/viewer3D-8bis-2Dimages.cpp b/examples/io/viewers/viewer3D-8bis-2Dimages.cpp
diff --git a/examples/io/viewers/viewer3D-9-3Dimages.cpp b/examples/io/viewers/viewer3D-9-3Dimages.cpp
diff --git a/examples/math/CMakeLists.txt b/examples/math/CMakeLists.txt
diff --git a/examples/math/polynomial-derivative.cpp b/examples/math/polynomial-derivative.cpp
diff --git a/examples/math/polynomial-read.cpp b/examples/math/polynomial-read.cpp
diff --git a/examples/math/polynomial2-derivative.cpp b/examples/math/polynomial2-derivative.cpp
diff --git a/examples/samples/Al.100.vol b/examples/samples/Al.100.vol
diff --git a/examples/samples/DCA.dat b/examples/samples/DCA.dat
diff --git a/examples/samples/DSS.dat b/examples/samples/DSS.dat
diff --git a/examples/samples/accflower-20-5-5-0.1.sdp b/examples/samples/accflower-20-5-5-0.1.sdp
diff --git a/examples/samples/cat10.vol b/examples/samples/cat10.vol
diff --git a/examples/samples/church-small.pgm b/examples/samples/church-small.pgm
diff --git a/examples/samples/church.pgm b/examples/samples/church.pgm
diff --git a/examples/samples/church.png b/examples/samples/church.png
diff --git a/examples/samples/circle-43.sdp b/examples/samples/circle-43.sdp
diff --git a/examples/samples/circleR10.pgm b/examples/samples/circleR10.pgm
diff --git a/examples/samples/circleR10modif.pgm b/examples/samples/circleR10modif.pgm
diff --git a/examples/samples/contourS.fc b/examples/samples/contourS.fc
diff --git a/examples/samples/contourS.gif b/examples/samples/contourS.gif
diff --git a/examples/samples/contourS.pgm b/examples/samples/contourS.pgm
diff --git a/examples/samples/contourS.png b/examples/samples/contourS.png
diff --git a/examples/samples/contourS2.fc b/examples/samples/contourS2.fc
diff --git a/examples/samples/ellipse-20-7-0.4.sdp b/examples/samples/ellipse-20-7-0.4.sdp
diff --git a/examples/samples/flower-30-8-3.sdp b/examples/samples/flower-30-8-3.sdp
diff --git a/examples/samples/helix.dat b/examples/samples/helix.dat
diff --git a/examples/samples/horopter.dat b/examples/samples/horopter.dat
diff --git a/examples/samples/hyperhelix1.dat b/examples/samples/hyperhelix1.dat
diff --git a/examples/samples/lobster.vol b/examples/samples/lobster.vol
diff --git a/examples/samples/plant-frechet.dat b/examples/samples/plant-frechet.dat
diff --git a/examples/samples/pointList3d.pl b/examples/samples/pointList3d.pl
diff --git a/examples/samples/sinus.dat b/examples/samples/sinus.dat
diff --git a/examples/samples/sinusplanar.dat b/examples/samples/sinusplanar.dat
diff --git a/examples/samples/smallSquare.dat b/examples/samples/smallSquare.dat
diff --git a/examples/samples/spheric1.dat b/examples/samples/spheric1.dat
diff --git a/examples/samples/tref.off b/examples/samples/tref.off
diff --git a/examples/samples/viviani.dat b/examples/samples/viviani.dat
diff --git a/examples/shapes/CMakeLists.txt b/examples/shapes/CMakeLists.txt
diff --git a/examples/shapes/exampleEuclideanShapesDecorator.cpp b/examples/shapes/exampleEuclideanShapesDecorator.cpp
diff --git a/examples/shapes/mesh3DConstructionAndVisualisation.cpp b/examples/shapes/mesh3DConstructionAndVisualisation.cpp
diff --git a/examples/topology/3dBorderExtraction.cpp b/examples/topology/3dBorderExtraction.cpp
diff --git a/examples/topology/3dBorderExtractionImg.cpp b/examples/topology/3dBorderExtractionImg.cpp
diff --git a/examples/topology/3dKSSurfaceExtraction.cpp b/examples/topology/3dKSSurfaceExtraction.cpp
diff --git a/examples/topology/CMakeLists.txt b/examples/topology/CMakeLists.txt
diff --git a/examples/topology/ctopo-1-3d.cpp b/examples/topology/ctopo-1-3d.cpp
diff --git a/examples/topology/ctopo-1.cpp b/examples/topology/ctopo-1.cpp
diff --git a/examples/topology/ctopo-1s-3d.cpp b/examples/topology/ctopo-1s-3d.cpp
diff --git a/examples/topology/ctopo-2-3d.cpp b/examples/topology/ctopo-2-3d.cpp
diff --git a/examples/topology/ctopo-2.cpp b/examples/topology/ctopo-2.cpp
diff --git a/examples/topology/ctopo-fillContours.cpp b/examples/topology/ctopo-fillContours.cpp
diff --git a/examples/topology/digitalSurfaceSlice.cpp b/examples/topology/digitalSurfaceSlice.cpp
diff --git a/examples/topology/frontierAndBoundary.cpp b/examples/topology/frontierAndBoundary.cpp
diff --git a/examples/topology/generateSimplicityTables2D.cpp b/examples/topology/generateSimplicityTables2D.cpp
diff --git a/examples/topology/generateSimplicityTables3D.cpp b/examples/topology/generateSimplicityTables3D.cpp
diff --git a/examples/topology/homotopicThinning3D.cpp b/examples/topology/homotopicThinning3D.cpp
diff --git a/examples/topology/khalimskySpaceScanner.cpp b/examples/topology/khalimskySpaceScanner.cpp
diff --git a/examples/topology/trackImplicitPolynomialSurfaceToOFF.cpp b/examples/topology/trackImplicitPolynomialSurfaceToOFF.cpp
diff --git a/examples/topology/volBreadthFirstTraversal.cpp b/examples/topology/volBreadthFirstTraversal.cpp
diff --git a/examples/topology/volMarchingCubes.cpp b/examples/topology/volMarchingCubes.cpp
diff --git a/examples/topology/volScanBoundary.cpp b/examples/topology/volScanBoundary.cpp
diff --git a/examples/topology/volToOFF.cpp b/examples/topology/volToOFF.cpp
diff --git a/examples/topology/volTrackBoundary.cpp b/examples/topology/volTrackBoundary.cpp
diff --git a/examples/tutorial-examples/AreaSurfaceEstimation-final.cpp b/examples/tutorial-examples/AreaSurfaceEstimation-final.cpp
diff --git a/examples/tutorial-examples/AreaSurfaceEstimation-template.cpp b/examples/tutorial-examples/AreaSurfaceEstimation-template.cpp
diff --git a/examples/tutorial-examples/CMakeLists.txt b/examples/tutorial-examples/CMakeLists.txt
diff --git a/examples/tutorial-examples/FMMErosion.cpp b/examples/tutorial-examples/FMMErosion.cpp
diff --git a/examples/tutorial-examples/fileGridCurveRanges.cpp b/examples/tutorial-examples/fileGridCurveRanges.cpp
diff --git a/examples/tutorial-examples/freemanChainFromImage.cpp b/examples/tutorial-examples/freemanChainFromImage.cpp
diff --git a/examples/tutorial-examples/imageGridCurveEstimator.cpp b/examples/tutorial-examples/imageGridCurveEstimator.cpp
diff --git a/examples/tutorial-examples/imageSetDT.cpp b/examples/tutorial-examples/imageSetDT.cpp
diff --git a/examples/tutorial-examples/polyhedralizer.cpp b/examples/tutorial-examples/polyhedralizer.cpp
diff --git a/examples/tutorial-examples/shapeDTViewer.cpp b/examples/tutorial-examples/shapeDTViewer.cpp
diff --git a/examples/tutorial-examples/shapeGridCurveEstimator.cpp b/examples/tutorial-examples/shapeGridCurveEstimator.cpp
diff --git a/examples/tutorial-examples/volDTGranulo-template.cpp b/examples/tutorial-examples/volDTGranulo-template.cpp
diff --git a/examples/tutorial-examples/volDTGranulo.cpp b/examples/tutorial-examples/volDTGranulo.cpp