error during installation windows 11

[primimazza]

  AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

[ChandlerBang]

Can you provide more about the error log?

[primimazza]

C:\Users\Administrator>pip install deeprobust
Requirement already satisfied: deeprobust in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages\deeprobust-0.2.7-py3.10.egg (0.2.7)
Collecting matplotlib>=3.1.1 (from deeprobust)
Using cached matplotlib-3.7.1-cp310-cp310-win_amd64.whl (7.6 MB)
Requirement already satisfied: numpy>=1.17.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.23.4)
Requirement already satisfied: torch>=1.2.0 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (2.0.1)
Requirement already satisfied: scipy>=1.3.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.11.0)
Collecting torchvision>=0.4.0 (from deeprobust)
Using cached torchvision-0.15.2-cp310-cp310-win_amd64.whl (1.2 MB)
Collecting texttable>=1.6.2 (from deeprobust)
Using cached texttable-1.6.7-py2.py3-none-any.whl (10 kB)
Requirement already satisfied: networkx>=2.4 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (3.1)
Collecting numba>=0.48.0 (from deeprobust)
Using cached numba-0.57.1-cp310-cp310-win_amd64.whl (2.5 MB)
Collecting Pillow>=7.0.0 (from deeprobust)
Using cached Pillow-9.5.0-cp310-cp310-win_amd64.whl (2.5 MB)
Requirement already satisfied: scikit_learn>=0.22.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.2.2)
Collecting scikit-image>=0.0 (from deeprobust)
Using cached scikit_image-0.21.0-cp310-cp310-win_amd64.whl (22.8 MB)
Collecting tensorboardX>=2.0 (from deeprobust)
Using cached tensorboardX-2.6.1-py2.py3-none-any.whl (101 kB)
Requirement already satisfied: tqdm>=3.0 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (4.65.0)
Collecting gensim<4.0,>=3.8 (from deeprobust)
Using cached gensim-3.8.3.tar.gz (23.4 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... error
error: subprocess-exited-with-error

× Preparing metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [55 lines of output]
running dist_info
creating C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info
writing C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\PKG-INFO
writing dependency_links to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\dependency_links.txt
writing requirements to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\requires.txt
writing top-level names to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\top_level.txt
writing manifest file 'C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\SOURCES.txt'
Traceback (most recent call last):
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in
main()
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 149, in prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\build_meta.py", line 380, in prepare_metadata_for_build_wheel
self.run_setup()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup
super(BuildMetaLegacyBackend,
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup
exec(code, locals())
File "", line 367, in
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_init_.py", line 107, in setup
return distutils.core.setup(**attrs)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup
return run_commands(dist)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands
dist.run_commands()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands
self.run_command(cmd)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\dist.py", line 1234, in run_command
super().run_command(command)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command
cmd_obj.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 99, in run
self.egg_info.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 314, in run
self.find_sources()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 322, in find_sources
mm.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 551, in run
self.add_defaults()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 589, in add_defaults
sdist.add_defaults(self)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\sdist.py", line 104, in add_defaults
super().add_defaults()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 251, in add_defaults
self.add_defaults_ext()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 335, in add_defaults_ext
build_ext = self.get_finalized_command('build_ext')
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 305, in get_finalized_command
cmd_obj.ensure_finalized()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 111, in ensure_finalized
self.finalize_options()
File "", line 111, in finalize_options
AttributeError: 'dict' object has no attribute 'NUMPY_SETUP'
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

[ChandlerBang]

It seems that you are having a problem installing the gensim pacalakge.

One solution is to install gensim yourself on windows.

Then you need to modify the setup.py file by removing the 'gensim':

DeepRobust/setup.py

Lines 18 to 33 in 122588e

	install_requires = [
	'matplotlib>=3.1.1',
	'numpy>=1.17.1',
	'torch>=1.2.0',
	'scipy>=1.3.1',
	'torchvision>=0.4.0',
	'texttable>=1.6.2',
	'networkx>=2.4',
	'numba>=0.48.0',
	'Pillow>=7.0.0',
	'scikit_learn>=0.22.1',
	'scikit-image>=0.0',
	'tensorboardX>=2.0',
	'tqdm>=3.0',
	'gensim>=3.8, <4.0'
	],

First clone this repository, then modifysetup.py, and run python setup.py install.

[primimazza]

I tried to perform some solutions but the error persists
C:\Users\Administrator>pip install gensim==3.8.3
Collecting gensim==3.8.3
Using cached gensim-3.8.3.tar.gz (23.4 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... error
error: subprocess-exited-with-error

× Preparing metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [55 lines of output]
running dist_info
creating C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info
writing C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\PKG-INFO
writing dependency_links to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\dependency_links.txt
writing requirements to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\requires.txt
writing top-level names to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\top_level.txt
writing manifest file 'C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\SOURCES.txt'
Traceback (most recent call last):
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in
main()
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 149, in prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 380, in prepare_metadata_for_build_wheel
self.run_setup()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup
super(BuildMetaLegacyBackend,
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup
exec(code, locals())
File "", line 367, in
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_init.py", line 107, in setup
return distutils.core.setup(**attrs)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup
return run_commands(dist)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands
dist.run_commands()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands
self.run_command(cmd)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\dist.py", line 1234, in run_command
super().run_command(command)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command
cmd_obj.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 99, in run
self.egg_info.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 314, in run
self.find_sources()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 322, in find_sources
mm.run()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 551, in run
self.add_defaults()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 589, in add_defaults
sdist.add_defaults(self)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\sdist.py", line 104, in add_defaults
super().add_defaults()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 251, in add_defaults
self._add_defaults_ext()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 335, in _add_defaults_ext
build_ext = self.get_finalized_command('build_ext')
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 305, in get_finalized_command
cmd_obj.ensure_finalized()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 111, in ensure_finalized
self.finalize_options()
File "", line 111, in finalize_options
AttributeError: 'dict' object has no attribute 'NUMPY_SETUP'
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

[ChandlerBang]

You may debug on how to install gensim in windows. Here is some answer from ChatGPT.

If the issue is hard to resolve, you can remove the file deeprobust/graph/defense/node_embedding.py which uses the gensim package and install the deeprobust package by "python setup.py install".

[fsherry]

@ChandlerBang Would you consider updating the version of gensim that is used in DeepRobust? This issue was fixed in gensim 4.3.0 (see https://github.com/RaRe-Technologies/gensim/releases/tag/4.3.0, with relevant issues piskvorky/gensim#3225, piskvorky/gensim#3362 and fix piskvorky/gensim#3363).

They have also said that they will not fix it in the latest version of gensim that DeepRobust currently can use (3.8.3) since they are not supporting it anymore (piskvorky/gensim#3386).

Since gensim is only used in one file in DeepRobust (https://github.com/DSE-MSU/DeepRobust/blob/d25d95b33724af9ab0385d5171c989f9b4ff2359/deeprobust/graph/defense/node_embedding.py)
and the gensim API has only changed a little bit in the new version (https://github.com/RaRe-Technologies/gensim/wiki/Migrating-from-Gensim-3.x-to-4) I think it is very straightforward to achieve this. I'd be happy to prepare a PR for this if desired.

This fix would make it much easier to reliably share packages that depend on DeepRobust.

[ChandlerBang]

@fsherry Thanks so much for the suggestion, and I have updated the package dependencies!

I sincerely apologize for the late response as I missed this thread before.