Update download links - hisat2 binaries

DaehwanKimLab · Sep 6, 2019 · c3a6ef3 · c3a6ef3
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diff --git a/docs/_data/download-binary.yml b/docs/_data/download-binary.yml
@@ -0,0 +1,52 @@
+latest_version: 2.1.0
+release:
+  - version: 2.1.0
+    date: 6/8/2017
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-Linux_x86_64/download
+      Windows: http://www.di.fc.ul.pt/~afalcao/hisat2_windows.html
+  - version: 2.0.5
+    date: 11/4/2016
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-205-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-205-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-205-Linux_x86_64/download
+  - version: 2.0.4
+    date: 5/18/2016
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-204-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-204-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-204-Linux_x86_64/download
+  - version: 2.0.3-beta
+    date: 3/28/2016
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-203-beta-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-203-beta-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-203-beta-Linux_x86_64/download
+  - version: 2.0.2-beta
+    date: 3/17/2016
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-202-beta-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-202-beta-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-202-beta-Linux_x86_64/download
+  - version: 2.0.1-beta
+    date: 11/19/2015
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-201-beta-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-201-beta-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-201-beta-Linux_x86_64/download
+  - version: 2.0.0-beta
+    date: 9/8/2015
+    name: HISAT2
+    artifacts:
+      Source: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-200-beta-source/download
+      OSX_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-200-beta-OSX_x86_64/download
+      Linux_x86_64: https://cloud.biohpc.swmed.edu/index.php/s/hisat2-200-beta-Linux_x86_64/download
diff --git a/docs/_pages/download.md b/docs/_pages/download.md
@@ -31,3 +31,19 @@ share: false
 
 ## Binaries
 
+{% assign target = site.data.download-binary.latest_version %}
+{% for release in site.data.download-binary.release %}
+{% assign version = release['version'] %}
+{% if version == target or target == null %}
+{% assign name = release['name'] %}
+### Version: {{name}} {{version}}
+<table style="border-collapse: collapse; border: none;">
+<tr style="border: none;"><td style="border: none;" colspan="2"><b>Release Date</b>: {{release['date']}}</td></tr>
+{% for artifact in release['artifacts'] %}
+{% assign type = artifact[0] %}
+<tr style="border: none;"><td style="border: none;">{{type}}</td><td style="border: none;"><a href="{{artifact[1]}}">{{artifact[1]}}</a></td></tr>
+{% endfor %}
+</table>
+{% endif %}
+{% endfor %}
+
diff --git a/docs_jhu/sidebar.inc.shtml b/docs_jhu/sidebar.inc.shtml
@@ -37,13 +37,13 @@
  <ul>
    <table width="100%"><tbody><tr><td>version 2.1.0</td> <td align="right">6/8/2017</td></tr>
        <tr>
-	 <td><a href="ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Source code</a></td>
+	 <td><a href="https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-source/download" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Source code</a></td>
        </tr>
        <tr>
-	 <td><a href="ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-Linux_x86_64.zip" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Linux x86_64 binary</a></td>
+	 <td><a href="https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-Linux_x86_64/download" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Linux x86_64 binary</a></td>
        </tr>
        <tr>
-	 <td><a href="ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-OSX_x86_64.zip" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Mac OS X x86_64 binary</a></td>
+	 <td><a href="https://cloud.biohpc.swmed.edu/index.php/s/hisat2-210-OSX_x86_64/download" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Mac OS X x86_64 binary</a></td>
        </tr>
        <tr>
 	 <td><a href="http://www.di.fc.ul.pt/~afalcao/hisat2_windows.html" onclick="javascript: pageTracker._trackPageview('/downloads/hisat'); ">&nbsp;&nbsp;&nbsp;Windowns binary</a></td>