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Extend QuantifyMIF to also support brightfield images #318

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jacob-rosenthal opened this issue Jun 22, 2022 · 0 comments
Open

Extend QuantifyMIF to also support brightfield images #318

jacob-rosenthal opened this issue Jun 22, 2022 · 0 comments
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enhancement New feature or request

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@jacob-rosenthal
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Right now QuantifyMIF is used for taking a cell segmentation mask and computing cell-level statistics into a counts matrix. However, there is no reason why this should be limited to IF images. We may also want to look at cell features in H&E images - channel intensities may not be as meaningful but the other properties computed by regionprops should be useful.

Maybe we can move the existing functionality into a new Transform called something like QuantifyCells, and then keep backwards compatibility by having QuantifyMIF call QuantifyCells internally plus maybe give a deprecation warning

@jacob-rosenthal jacob-rosenthal added the enhancement New feature or request label Jun 22, 2022
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