Skip to content

Issues: Dana-Farber-AIOS/pathml

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 163 Closed
42 Open 163 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Unable to Load IMC data (ome.tiff format) properly. Image data appears 0 only... bug Something isn't working
#409 opened Jan 24, 2024 by Aakanksha-Rana
pachage install bug bug Something isn't working
#406 opened Dec 31, 2023 by Yicijiuhaobala
AttributeError pathml.core
#402 opened Dec 13, 2023 by tdenize
8
Compatibility Query: Using PathML for X-Ray Images with Missing 'TotalPixelMatrixRows' Attribute bug Something isn't working
#401 opened Dec 13, 2023 by xinyuejohn
add install instructions for windows enhancement New feature or request
#399 opened Dec 12, 2023 by Dana-Farber
1
Algorithm for Improved Spectral Unmixing with Reference Image Integration enhancement New feature or request
#375 opened Nov 9, 2023 by sreekarreddydfci
Add Installation and Setup Instructions for Mamba alongside Conda bug Something isn't working
#370 opened Oct 23, 2023 by sreekarreddydfci
@sreekarreddydfci
1
Use updated openslide v4.0.0 dependencies Pull requests that update a dependency file
#368 opened Oct 16, 2023 by jacob-rosenthal
@jamesgwen
1
Unable to read in all image layers in .vdi file, only index 0 is read in bug Something isn't working
#364 opened Aug 7, 2023 by RYY0722
3
Implement Tile Stitching Feature in Image Preprocessing enhancement New feature or request
#363 opened Jul 26, 2023 by sreekarreddydfci
@sreekarreddydfci
Make a smaller docker image enhancement New feature or request
#357 opened Jun 24, 2023 by Dana-Farber
@jacob-rosenthal @achowdhury364
Need assistance with running Pathml package via Colab or Docker and resolving errors
#350 opened May 15, 2023 by DRSEI
6
necrotic tissue detection for HE and multiplex imaging enhancement New feature or request
#345 opened Jan 26, 2023 by YubinXie
Support GPUs on Docker installation enhancement New feature or request
#343 opened Jan 10, 2023 by Dana-Farber
@jacob-rosenthal
How to implement HoVer-Net Model in TIAToolBox?
#342 opened Dec 15, 2022 by WilliWespe
How to train hovernet starting with semantic-level mask image? enhancement New feature or request
#339 opened Dec 1, 2022 by OmarAshkar
3
Deepcell segmentation without cytoplasm channel enhancement New feature or request
#338 opened Nov 10, 2022 by jamesMo84
1
Running preprocessing pipeline on Tiles object enhancement New feature or request
#332 opened Oct 14, 2022 by PaulScemama
15
Can Pathml support or read in “.TMAP” formatted WSI file? enhancement New feature or request
#331 opened Sep 5, 2022 by liuxiaoping2020
1
best way to extract anndata ( h5ad ) from hdf5 file enhancement New feature or request
#330 opened Sep 2, 2022 by afshinmoradi
1
Question about the StainNormalizationHE transform
#329 opened Aug 22, 2022 by ckv1110
1
annotated-dic enhancement New feature or request
#326 opened Aug 15, 2022 by afshinmoradi
3
Extend QuantifyMIF to also support brightfield images enhancement New feature or request
#318 opened Jun 22, 2022 by jacob-rosenthal
Rename the default kernel in docker & create intro splash page for 127.0.0.1:8888 documentation Improvements or additions to documentation enhancement New feature or request
#317 opened Jun 21, 2022 by Dana-Farber
1
SegmentMIF fails and causes program to hang bug Something isn't working
#299 opened Feb 10, 2022 by surya-narayanan
4
ProTip! Type g i on any issue or pull request to go back to the issue listing page.