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Switch to GitHub Actions for CI and Deployment
Switch to GitHub Actions (GHA) for CI and Deployment. GHA provides a richer build matrix and longer build times than Travis as well as smoother integration. (Additionally, remove AppVeyor which was always a bit flakey). In addition, this branch addresses several bugs identified by the new CI, mainly related to updated tidyverse packages and stricter recycling rules inside if() clauses.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,25 @@ | ||
| ## CI Files | ||
| ^.github$ | ||
| ^codecov\.yml$ | ||
| ^appveyor\.yml$ | ||
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| ## RStudio Files | ||
| ^.*\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
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| ## Pkgdown docs | ||
| _pkgdown.yml | ||
| ^docs$ | ||
| ^_pkgdown\.yml$ | ||
| ^pkgdown$ | ||
| ^.travis\.yml$ | ||
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| ## GH files (not part of package) | ||
| .gitignore.deploy | ||
| README.Rmd | ||
| README.md | ||
| ^data-raw$ | ||
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| ## Other autogenerated files | ||
| ^README-.*\.png$ | ||
| figs/* | ||
| build_steps.R | ||
| ^codecov\.yml$ | ||
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| ## Misc other files | ||
| LICENSE | ||
| CONTRIBUTORS | ||
| .github/* | ||
| ^appveyor\.yml$ |
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| # Adapted from https://github.com/r-lib/actions/blob/master/examples/check-standard.yaml | ||
| on: | ||
| push: | ||
| branches: | ||
| - develop | ||
| pull_request: | ||
| branches: | ||
| - develop | ||
|
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| name: R-CMD-check and Deploy | ||
|
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| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
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| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: windows-latest, r: '3.6'} | ||
| - {os: macOS-latest, r: '3.6'} | ||
| - {os: macOS-latest, r: 'devel'} | ||
| - {os: ubuntu-16.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
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| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| RSPM: ${{ matrix.config.rspm }} | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - uses: r-lib/actions/setup-r@master | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
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| - uses: r-lib/actions/setup-pandoc@master | ||
|
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| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| shell: Rscript {0} | ||
|
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| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}- | ||
|
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| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| env: | ||
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
| run: | | ||
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
| sudo -s eval "$sysreqs" | ||
| - name: Install dependencies | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran(c('rcmdcheck', 'devtools', 'roxygen2', 'testthat', 'markdown', 'knitr', 'rmarkdown', 'pkgdown')) | ||
| remotes::install_cran(c('gifski', 'gganimate', 'cvxclustr', 'cvxbiclustr')) | ||
| shell: Rscript {0} | ||
|
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| - name: Add auto-generated files | ||
| run: | | ||
| file.create("NAMESPACE") | ||
| cat("# Generated by roxygen2: do not edit by hand", file = "NAMESPACE") | ||
| cat("\n\nuseDynLib(clustRviz)", file = "NAMESPACE", append = TRUE) | ||
| Rcpp::compileAttributes(verbose = TRUE) | ||
| roxygen2::roxygenize() | ||
| ## Avoid time-out | ||
| cat("WRITING TEST STUBS -------- \n\n") | ||
| skeleton <- readLines(file.path("tests", "test_stub.R")) | ||
| for(f in list.files(file.path("tests", "testthat"), pattern="test_")){ | ||
| stub <- gsub("test_(.*)\\.R", "\\1", f) | ||
| writeLines(gsub("PATTERN", stub, skeleton), | ||
| file.path("tests", paste0("test_", stub, ".R"))) | ||
| } | ||
| unlink(file.path("tests", "test_stub.R")) | ||
| ## GitHash for debugging purposes | ||
| cat("ADDING GIT HASH -------- \n\n") | ||
| if(!dir.exists("inst")){ | ||
| dir.create("inst") | ||
| } | ||
| writeLines(system("git rev-parse HEAD", intern=TRUE), "inst/GIT.HASH") | ||
| shell: Rscript {0} | ||
|
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| - name: R CMD check | ||
| env: | ||
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | ||
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
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| - name: Upload check results | ||
| if: failure() | ||
| uses: actions/upload-artifact@master | ||
| with: | ||
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | ||
| path: check | ||
|
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| - name: Run coverage | ||
| if: success() && matrix.config.os == 'macOS-latest' && matrix.config.r == '3.6' | ||
| run: | | ||
| remotes::install_cran('covr') | ||
| library(covr) | ||
| flags <- getOption("covr.flags") | ||
| flags[] <- gsub("-O0 ", "", flags) | ||
| options(covr.flags=flags) | ||
| codecov(quiet=FALSE) | ||
| shell: Rscript {0} | ||
|
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| - name: Clean up build artifacts and render pkgdown site | ||
| if: success() && matrix.config.os == 'ubuntu-16.04' | ||
| run: | | ||
| devtools::install() | ||
| rmarkdown::render('README.Rmd') | ||
| pkgdown::build_site() | ||
| unlink('src/*o', force = TRUE) | ||
| unlink('*Rcheck', force = TRUE, recursive = TRUE) | ||
| unlink('*tar.gz', force = TRUE) | ||
| file.rename('.github/.gitignore.deploy', '.gitignore') | ||
| ## Copy GIF to a place where pkgdown site will find it | ||
| dir.create("docs/inst", recursive = TRUE) | ||
| file.copy("inst/path_dyn.gif", "docs/inst/path_dyn.gif") | ||
| shell: Rscript {0} | ||
|
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| - name: Deploy build package | ||
| if: success() && matrix.config.os == 'ubuntu-16.04' && github.ref == 'refs/heads/develop' | ||
| run: | | ||
| git checkout master || git checkout -b master | ||
| git add man/* || echo "No doc changes to commit" | ||
| git add R/* || echo "No R code changes to commit" | ||
| git add src/* || echo "No C++ code changes to commit" | ||
| git add README.md || echo "No README changes to commit" | ||
| git add NAMESPACE || echo "No NAMESPACE changes to commit" | ||
| git add vignettes/*html || echo "No vignette HTML changes to commit" | ||
| git add docs/* || echo "No pkgdown changes to commit" | ||
| git add .gitignore || echo "No .gitignore changes to commit" | ||
| git config user.email "michael.weylandt@gmail.com" | ||
| git config user.name "${{github.actor}} (Auto-Deploy via GitHub Actions)" | ||
| git commit -m "Add build artifacts" || echo "No changes to commit" | ||
| git push -f -u https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git master || echo "No changes to commit" | ||
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This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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