The MUC19 gene in Denisovans, Neanderthals, and Modern Humans: An Evolutionary History of Recurrent Introgression and Natural Selection

Code associated with Villanea and Peede et. al. 202X.

Directory Overview

├── analyses_nbs
├── ancient_americans
├── arc_snp_density
├── figure_nbs
│   └── figures
├── heterozygosity
├── pbs
├── pbs_sims
│   ├── data
│   ├── output
│   │   └── pbs
│   └── scripts
│       └── slim
├── sequence_divergence
├── site_patterns
├── vcf_data
├── vntr
└── windowing
    ├── arc
    └── tgp

Data Generation Directories

• ancient_americans
• arc_snp_density
• heterozygosity
• pbs
• pbs_sims
• sequence_divergence
• site_patterns
• vcf_data
• vntr
• windowing

Data Analysis Directories

• analyses_nbs
• figure_nbs

Notes

As this code is associated with a manuscript that is currently going through the peer-review process and due to the fact that GitHub only stores up to 100 Mb per repository some directories are compressed using .tar.gz or .zip. To extract the files those directories you will need to run either tar -xf target_directory.tar.gz or unzip target_directory.zip. Once the associated manuscript has been peer-reviewed all output files will be uploaded to the appropriate locations.