updated doc

DavidMercier · Oct 24, 2023 · 94c1a59 · 94c1a59
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diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -16,7 +16,7 @@ build:
 
 # Build documentation in the "docs/" directory with Sphinx
 sphinx:
-  configuration: doc/conf.py
+  configuration: docs/conf.py
   # You can configure Sphinx to use a different builder, for instance use the dirhtml builder for simpler URLs
   # builder: "dirhtml"
   # Fail on all warnings to avoid broken references

diff --git a/doc/E_H.rst → docs/E_H.rst b/doc/E_H.rst → docs/E_H.rst
diff --git a/doc/Makefile → docs/Makefile b/doc/Makefile → docs/Makefile
diff --git a/doc/_pictures/All_indentationGrid.png → docs/_pictures/All_indentationGrid.png b/doc/_pictures/All_indentationGrid.png → docs/_pictures/All_indentationGrid.png
diff --git a/doc/_pictures/E-H_Ashby.png → docs/_pictures/E-H_Ashby.png b/doc/_pictures/E-H_Ashby.png → docs/_pictures/E-H_Ashby.png
diff --git a/doc/_pictures/ExperimentalShiftModulus.png → docs/_pictures/ExperimentalShiftModulus.png b/doc/_pictures/ExperimentalShiftModulus.png → docs/_pictures/ExperimentalShiftModulus.png
diff --git a/doc/_pictures/GUI_Main_Window.png → docs/_pictures/GUI_Main_Window.png b/doc/_pictures/GUI_Main_Window.png → docs/_pictures/GUI_Main_Window.png
diff --git a/doc/_pictures/GUI_Main_Window_2.png → docs/_pictures/GUI_Main_Window_2.png b/doc/_pictures/GUI_Main_Window_2.png → docs/_pictures/GUI_Main_Window_2.png
diff --git a/doc/_pictures/ICBTI_criteria.png → docs/_pictures/ICBTI_criteria.png b/doc/_pictures/ICBTI_criteria.png → docs/_pictures/ICBTI_criteria.png
diff --git a/doc/_pictures/InterpolationStep.png → docs/_pictures/InterpolationStep.png b/doc/_pictures/InterpolationStep.png → docs/_pictures/InterpolationStep.png
diff --git a/..._pictures/MTS_example1_25x25_E_GUI_15.png → ..._pictures/MTS_example1_25x25_E_GUI_15.png b/..._pictures/MTS_example1_25x25_E_GUI_15.png → ..._pictures/MTS_example1_25x25_E_GUI_15.png
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diff --git a/doc/_pictures/MTS_example1_25x25_H_GUI.gif → docs/_pictures/MTS_example1_25x25_H_GUI.gif b/doc/_pictures/MTS_example1_25x25_H_GUI.gif → docs/_pictures/MTS_example1_25x25_H_GUI.gif
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diff --git a/..._pictures/MTS_example1_25x25_H_GUI_09.png → ..._pictures/MTS_example1_25x25_H_GUI_09.png b/..._pictures/MTS_example1_25x25_H_GUI_09.png → ..._pictures/MTS_example1_25x25_H_GUI_09.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_10.png → ..._pictures/MTS_example1_25x25_H_GUI_10.png b/..._pictures/MTS_example1_25x25_H_GUI_10.png → ..._pictures/MTS_example1_25x25_H_GUI_10.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_11.png → ..._pictures/MTS_example1_25x25_H_GUI_11.png b/..._pictures/MTS_example1_25x25_H_GUI_11.png → ..._pictures/MTS_example1_25x25_H_GUI_11.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_12.png → ..._pictures/MTS_example1_25x25_H_GUI_12.png b/..._pictures/MTS_example1_25x25_H_GUI_12.png → ..._pictures/MTS_example1_25x25_H_GUI_12.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_13.png → ..._pictures/MTS_example1_25x25_H_GUI_13.png b/..._pictures/MTS_example1_25x25_H_GUI_13.png → ..._pictures/MTS_example1_25x25_H_GUI_13.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_14.png → ..._pictures/MTS_example1_25x25_H_GUI_14.png b/..._pictures/MTS_example1_25x25_H_GUI_14.png → ..._pictures/MTS_example1_25x25_H_GUI_14.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_15.png → ..._pictures/MTS_example1_25x25_H_GUI_15.png b/..._pictures/MTS_example1_25x25_H_GUI_15.png → ..._pictures/MTS_example1_25x25_H_GUI_15.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_17.png → ..._pictures/MTS_example1_25x25_H_GUI_17.png b/..._pictures/MTS_example1_25x25_H_GUI_17.png → ..._pictures/MTS_example1_25x25_H_GUI_17.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_18.png → ..._pictures/MTS_example1_25x25_H_GUI_18.png b/..._pictures/MTS_example1_25x25_H_GUI_18.png → ..._pictures/MTS_example1_25x25_H_GUI_18.png
diff --git a/..._pictures/MTS_example1_25x25_H_GUI_19.png → ..._pictures/MTS_example1_25x25_H_GUI_19.png b/..._pictures/MTS_example1_25x25_H_GUI_19.png → ..._pictures/MTS_example1_25x25_H_GUI_19.png
diff --git a/doc/_pictures/MTS_indentationGrid.png → docs/_pictures/MTS_indentationGrid.png b/doc/_pictures/MTS_indentationGrid.png → docs/_pictures/MTS_indentationGrid.png
diff --git a/doc/_pictures/RemoveNaN.png → docs/_pictures/RemoveNaN.png b/doc/_pictures/RemoveNaN.png → docs/_pictures/RemoveNaN.png
diff --git a/doc/_pictures/SmoothingStep.png → docs/_pictures/SmoothingStep.png b/doc/_pictures/SmoothingStep.png → docs/_pictures/SmoothingStep.png
diff --git a/doc/_pictures/SmoothingStepError.png → docs/_pictures/SmoothingStepError.png b/doc/_pictures/SmoothingStepError.png → docs/_pictures/SmoothingStepError.png
diff --git a/doc/_pictures/binSizeEffect.png → docs/_pictures/binSizeEffect.png b/doc/_pictures/binSizeEffect.png → docs/_pictures/binSizeEffect.png
diff --git a/doc/_pictures/binStepEffect.png → docs/_pictures/binStepEffect.png b/doc/_pictures/binStepEffect.png → docs/_pictures/binStepEffect.png
diff --git a/doc/_pictures/bin_microMap.png → docs/_pictures/bin_microMap.png b/doc/_pictures/bin_microMap.png → docs/_pictures/bin_microMap.png
diff --git a/doc/_pictures/cleanedE-H.png → docs/_pictures/cleanedE-H.png b/doc/_pictures/cleanedE-H.png → docs/_pictures/cleanedE-H.png
diff --git a/doc/_pictures/clusterMap.png → docs/_pictures/clusterMap.png b/doc/_pictures/clusterMap.png → docs/_pictures/clusterMap.png
diff --git a/doc/_pictures/cs_map.png → docs/_pictures/cs_map.png b/doc/_pictures/cs_map.png → docs/_pictures/cs_map.png
diff --git a/doc/_pictures/div_map.png → docs/_pictures/div_map.png b/doc/_pictures/div_map.png → docs/_pictures/div_map.png
diff --git a/doc/_pictures/download.png → docs/_pictures/download.png b/doc/_pictures/download.png → docs/_pictures/download.png
diff --git a/...ctures/gif_4Dmap/25x25pixels_25slices.gif → ...ctures/gif_4Dmap/25x25pixels_25slices.gif b/...ctures/gif_4Dmap/25x25pixels_25slices.gif → ...ctures/gif_4Dmap/25x25pixels_25slices.gif
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_01.png → ...MTS_example1_25x25.xls_3DSlice.mat_01.png b/...MTS_example1_25x25.xls_3DSlice.mat_01.png → ...MTS_example1_25x25.xls_3DSlice.mat_01.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_02.png → ...MTS_example1_25x25.xls_3DSlice.mat_02.png b/...MTS_example1_25x25.xls_3DSlice.mat_02.png → ...MTS_example1_25x25.xls_3DSlice.mat_02.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_03.png → ...MTS_example1_25x25.xls_3DSlice.mat_03.png b/...MTS_example1_25x25.xls_3DSlice.mat_03.png → ...MTS_example1_25x25.xls_3DSlice.mat_03.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_04.png → ...MTS_example1_25x25.xls_3DSlice.mat_04.png b/...MTS_example1_25x25.xls_3DSlice.mat_04.png → ...MTS_example1_25x25.xls_3DSlice.mat_04.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_05.png → ...MTS_example1_25x25.xls_3DSlice.mat_05.png b/...MTS_example1_25x25.xls_3DSlice.mat_05.png → ...MTS_example1_25x25.xls_3DSlice.mat_05.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_06.png → ...MTS_example1_25x25.xls_3DSlice.mat_06.png b/...MTS_example1_25x25.xls_3DSlice.mat_06.png → ...MTS_example1_25x25.xls_3DSlice.mat_06.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_07.png → ...MTS_example1_25x25.xls_3DSlice.mat_07.png b/...MTS_example1_25x25.xls_3DSlice.mat_07.png → ...MTS_example1_25x25.xls_3DSlice.mat_07.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_08.png → ...MTS_example1_25x25.xls_3DSlice.mat_08.png b/...MTS_example1_25x25.xls_3DSlice.mat_08.png → ...MTS_example1_25x25.xls_3DSlice.mat_08.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_09.png → ...MTS_example1_25x25.xls_3DSlice.mat_09.png b/...MTS_example1_25x25.xls_3DSlice.mat_09.png → ...MTS_example1_25x25.xls_3DSlice.mat_09.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_10.png → ...MTS_example1_25x25.xls_3DSlice.mat_10.png b/...MTS_example1_25x25.xls_3DSlice.mat_10.png → ...MTS_example1_25x25.xls_3DSlice.mat_10.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_11.png → ...MTS_example1_25x25.xls_3DSlice.mat_11.png b/...MTS_example1_25x25.xls_3DSlice.mat_11.png → ...MTS_example1_25x25.xls_3DSlice.mat_11.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_12.png → ...MTS_example1_25x25.xls_3DSlice.mat_12.png b/...MTS_example1_25x25.xls_3DSlice.mat_12.png → ...MTS_example1_25x25.xls_3DSlice.mat_12.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_13.png → ...MTS_example1_25x25.xls_3DSlice.mat_13.png b/...MTS_example1_25x25.xls_3DSlice.mat_13.png → ...MTS_example1_25x25.xls_3DSlice.mat_13.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_14.png → ...MTS_example1_25x25.xls_3DSlice.mat_14.png b/...MTS_example1_25x25.xls_3DSlice.mat_14.png → ...MTS_example1_25x25.xls_3DSlice.mat_14.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_15.png → ...MTS_example1_25x25.xls_3DSlice.mat_15.png b/...MTS_example1_25x25.xls_3DSlice.mat_15.png → ...MTS_example1_25x25.xls_3DSlice.mat_15.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_16.png → ...MTS_example1_25x25.xls_3DSlice.mat_16.png b/...MTS_example1_25x25.xls_3DSlice.mat_16.png → ...MTS_example1_25x25.xls_3DSlice.mat_16.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_17.png → ...MTS_example1_25x25.xls_3DSlice.mat_17.png b/...MTS_example1_25x25.xls_3DSlice.mat_17.png → ...MTS_example1_25x25.xls_3DSlice.mat_17.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_18.png → ...MTS_example1_25x25.xls_3DSlice.mat_18.png b/...MTS_example1_25x25.xls_3DSlice.mat_18.png → ...MTS_example1_25x25.xls_3DSlice.mat_18.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_19.png → ...MTS_example1_25x25.xls_3DSlice.mat_19.png b/...MTS_example1_25x25.xls_3DSlice.mat_19.png → ...MTS_example1_25x25.xls_3DSlice.mat_19.png
diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_20.png → ...MTS_example1_25x25.xls_3DSlice.mat_20.png b/...MTS_example1_25x25.xls_3DSlice.mat_20.png → ...MTS_example1_25x25.xls_3DSlice.mat_20.png
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diff --git a/...MTS_example1_25x25.xls_3DSlice.mat_22.png → ...MTS_example1_25x25.xls_3DSlice.mat_22.png b/...MTS_example1_25x25.xls_3DSlice.mat_22.png → ...MTS_example1_25x25.xls_3DSlice.mat_22.png
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diff --git a/...ictures/grid_indentation_length_scale.png → ...ictures/grid_indentation_length_scale.png b/...ictures/grid_indentation_length_scale.png → ...ictures/grid_indentation_length_scale.png
diff --git a/...ures/grid_indentation_length_scale_cs.png → ...ures/grid_indentation_length_scale_cs.png b/...ures/grid_indentation_length_scale_cs.png → ...ures/grid_indentation_length_scale_cs.png
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diff --git a/doc/_pictures/gui_index_2.png → docs/_pictures/gui_index_2.png b/doc/_pictures/gui_index_2.png → docs/_pictures/gui_index_2.png
diff --git a/doc/_pictures/icbti_flower.png → docs/_pictures/icbti_flower.png b/doc/_pictures/icbti_flower.png → docs/_pictures/icbti_flower.png
diff --git a/doc/_pictures/icbti_ni-sic.png → docs/_pictures/icbti_ni-sic.png b/doc/_pictures/icbti_ni-sic.png → docs/_pictures/icbti_ni-sic.png
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diff --git a/doc/_static/theme_overrides.css → docs/_static/theme_overrides.css b/doc/_static/theme_overrides.css → docs/_static/theme_overrides.css
diff --git a/doc/conf.py → docs/conf.py b/doc/conf.py → docs/conf.py
diff --git a/doc/examples.rst → docs/examples.rst b/doc/examples.rst → docs/examples.rst
diff --git a/doc/getting_started.rst → docs/getting_started.rst b/doc/getting_started.rst → docs/getting_started.rst
diff --git a/doc/image_correlation.rst → docs/image_correlation.rst b/doc/image_correlation.rst → docs/image_correlation.rst
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diff --git a/doc/make.bat → docs/make.bat b/doc/make.bat → docs/make.bat
diff --git a/doc/map_options.rst → docs/map_options.rst b/doc/map_options.rst → docs/map_options.rst
diff --git a/doc/mapping.rst → docs/mapping.rst b/doc/mapping.rst → docs/mapping.rst
diff --git a/doc/pdf_cdf.rst → docs/pdf_cdf.rst b/doc/pdf_cdf.rst → docs/pdf_cdf.rst
diff --git a/doc/tomography.rst → docs/tomography.rst b/doc/tomography.rst → docs/tomography.rst