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use_tidy_github_actions()
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DavisVaughan committed Oct 31, 2023
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1 change: 1 addition & 0 deletions .github/.gitignore
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*.html
92 changes: 34 additions & 58 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches:
- master
branches: [main, master]
pull_request:
branches:
- master
branches: [main, master]

name: R-CMD-check

Expand All @@ -18,69 +22,41 @@ jobs:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}

- {os: windows-latest, r: 'release'}
# Use 3.6 to trigger usage of RTools35
- {os: windows-latest, r: '3.6'}
- {os: macOS-latest, r: '3.6'}
- {os: macOS-latest, r: 'devel'}
- {os: ubuntu-16.04, r: '3.2', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.3', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.4', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.5', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
# use 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: '4.1'}

- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.cran }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@master
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-pandoc@master

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
shell: Rscript {0}

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
- uses: r-lib/actions/setup-r-dependencies@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
extra-packages: any::rcmdcheck
needs: check

- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}

- name: Check
run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check")
shell: Rscript {0}

- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
- uses: r-lib/actions/check-r-package@v2
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check

- name: Test coverage
if: matrix.config.os == 'macOS-latest' && matrix.config.r == '3.6'
run: covr::codecov()
shell: Rscript {0}
upload-snapshots: true
54 changes: 39 additions & 15 deletions .github/workflows/pkgdown.yaml
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@@ -1,24 +1,48 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: master
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:

name: pkgdown

jobs:
pkgdown:
runs-on: macOS-latest
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@master
- uses: r-lib/actions/setup-pandoc@master
- name: Install dependencies
run: |
install.packages("remotes")
remotes::install_deps(dependencies = TRUE)
remotes::install_dev("pkgdown")
shell: Rscript {0}
- name: Install package
run: R CMD INSTALL .
- name: Deploy package
run: pkgdown::deploy_to_branch(new_process = FALSE)
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.4.1
with:
clean: false
branch: gh-pages
folder: docs
72 changes: 52 additions & 20 deletions .github/workflows/pr-commands.yaml
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@@ -1,47 +1,79 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
issue_comment:
types: [created]

name: Commands

jobs:
document:
if: startsWith(github.event.comment.body, '/document')
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }}
name: document
runs-on: macOS-latest
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v1
- uses: r-lib/actions/pr-fetch@master
- uses: actions/checkout@v3

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@master
- name: Install dependencies
run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::roxygen2
needs: pr-document

- name: Document
run: Rscript -e 'roxygen2::roxygenise()'
run: roxygen2::roxygenise()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
git add man/\* NAMESPACE
git commit -m 'Document'
- uses: r-lib/actions/pr-push@master
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

style:
if: startsWith(github.event.comment.body, '/style')
name: document
runs-on: macOS-latest
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
name: style
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@master
- uses: r-lib/actions/pr-fetch@master
- uses: actions/checkout@v3

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-r@master

- uses: r-lib/actions/setup-r@v2

- name: Install dependencies
run: Rscript -e 'install.packages("styler")'
- name: style
run: Rscript -e 'styler::style_pkg()'
run: install.packages("styler")
shell: Rscript {0}

- name: Style
run: styler::style_pkg()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
git add \*.R
git commit -m 'style'
- uses: r-lib/actions/pr-push@master
git commit -m 'Style'
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
50 changes: 50 additions & 0 deletions .github/workflows/test-coverage.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: test-coverage

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr
needs: coverage

- name: Test coverage
run: |
covr::codecov(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
shell: Rscript {0}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v3
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
4 changes: 2 additions & 2 deletions README.Rmd
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Expand Up @@ -18,8 +18,8 @@ knitr::opts_chunk$set(
# warp

<!-- badges: start -->
[![Codecov test coverage](https://codecov.io/gh/DavisVaughan/warp/branch/master/graph/badge.svg)](https://codecov.io/gh/DavisVaughan/warp?branch=master)
[![R build status](https://github.com/DavisVaughan/warp/workflows/R-CMD-check/badge.svg)](https://github.com/DavisVaughan/warp)
[![R-CMD-check](https://github.com/DavisVaughan/warp/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/DavisVaughan/warp/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/DavisVaughan/warp/branch/main/graph/badge.svg)](https://app.codecov.io/gh/DavisVaughan/warp?branch=main)
<!-- badges: end -->

![](https://media.giphy.com/media/jjeK2Er3E5igw/giphy.gif)
Expand Down
5 changes: 2 additions & 3 deletions README.md
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Expand Up @@ -5,10 +5,9 @@

<!-- badges: start -->

[![R-CMD-check](https://github.com/DavisVaughan/warp/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/DavisVaughan/warp/actions/workflows/R-CMD-check.yaml)
[![Codecov test
coverage](https://codecov.io/gh/DavisVaughan/warp/branch/master/graph/badge.svg)](https://codecov.io/gh/DavisVaughan/warp?branch=master)
[![R build
status](https://github.com/DavisVaughan/warp/workflows/R-CMD-check/badge.svg)](https://github.com/DavisVaughan/warp)
coverage](https://codecov.io/gh/DavisVaughan/warp/branch/main/graph/badge.svg)](https://app.codecov.io/gh/DavisVaughan/warp?branch=main)
<!-- badges: end -->

![](https://media.giphy.com/media/jjeK2Er3E5igw/giphy.gif)
Expand Down
2 changes: 2 additions & 0 deletions codecov.yml
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Expand Up @@ -6,7 +6,9 @@ coverage:
default:
target: auto
threshold: 1%
informational: true
patch:
default:
target: auto
threshold: 1%
informational: true

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