file paths bugfixes for Windows

doc/conf.py

@@ -83,7 +83,7 @@ def __getattr__(cls, name):
 # built documents.
 #
 # The short X.Y version.
-version = u'0.5-rc3'
+version = u'0.5-rc4'
 # The full version, including alpha/beta/rc tags.
 release = u'0.5'
 

setup.py

@@ -22,7 +22,7 @@
 
 setup(
     name = 'tramway',
-    version = '0.5-rc3',
+    version = '0.5-rc4',
     description = 'TRamWAy',
     long_description = long_description,
     url = 'https://github.com/DecBayComp/TRamWAy',

tests/test_analyzer_pipeline.py

@@ -100,12 +100,12 @@ def map(self):
     with open(script_name, 'w') as f:
         f.write(script(env))
         f.write('a.run()\n')
-    out = subprocess.check_output([sys.executable, script_name], encoding='utf8', timeout=60)
+    out = subprocess.check_output([sys.executable, script_name], encoding='utf8', timeout=120)
     logger.info(out)
     with open(script_name, 'w') as f:
         f.write(script())
         f.write(test)
-    out = subprocess.check_output([sys.executable, script_name], encoding='utf8', timeout=30)
+    out = subprocess.check_output([sys.executable, script_name], encoding='utf8', timeout=60)
     logger.info(out)
     assert out.endswith("""\
 <class 'pandas.core.frame.DataFrame'>
@@ -129,16 +129,14 @@ def test_LocalHost(self, tmpdir, dynamicmesh):
         env = "a.env = environments.LocalHost"
         run_script1(tmpdir, dynamicmesh, env)
     def test_GPULab(self, tmpdir, dynamicmesh):
-        with open(os.path.join(os.path.dirname(__file__), 'credentials'), 'r') as f:
+        with open(os.path.join(os.path.dirname(__file__), 'maestro.credentials'), 'r') as f:
             username = f.readline().rstrip()
             password = f.readline().rstrip()
         env = """\
-a.env = environments.GPULab
+a.env = environments.Maestro
 a.env.username = '{username}'
 a.env.ssh._password = '{password}'
-a.env.container = 'tramway-hpc-210111.sif'
-#a.env.debug = True
-a.env.sbatch_options.update(dict(p='dbc'))\
+#a.env.sbatch_options.update(dict(p='dbc'))\
 """.format(username=username, password=password)
 #        options = """,
 #        sbatch_options=dict(c=a.mapper.worker_count)\

tramway/analyzer/__init__.py

@@ -257,7 +257,7 @@ def logger(self):
             import logging
             self._logger = logging.getLogger(__name__)
             if not self._logger.hasHandlers():
-                self._logger.setLevel(logging.DEBUG)
+                self._logger.setLevel(logging.INFO)
                 self._logger.addHandler(logging.StreamHandler())
         return self._logger
     @logger.setter