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@Deep-MI

Deep Medical Imaging Lab (PI Reuter)

Repositories of the Reuter DeepMI Lab

Pinned

  1. FastSurfer FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Jupyter Notebook 427 106

  2. FatSegNet FatSegNet Public

    Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

    Python 21 11

  3. fsqc fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 50 13

  4. LaPy LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 52 13

  5. BrainPrint BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 11 9

  6. olf-bulb-segmentation olf-bulb-segmentation Public

    Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI

    Jupyter Notebook 6 1

Repositories

Showing 10 of 16 repositories
  • LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 52 MIT 13 6 0 Updated May 8, 2024
  • FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Jupyter Notebook 427 Apache-2.0 106 11 3 Updated May 7, 2024
  • Deep-MI.github.io Public

    Deep Medical Imaging Lab Webpage

    TeX 2 MIT 12 0 0 Updated May 6, 2024
  • WhipperSnapPy Public

    Python OpenGL Tool for Screenshots of Surface Overlays

    Python 0 MIT 7 1 1 Updated May 4, 2024
  • DISCUS Public

    The repository contains code for the Geometric Deep Learning for Diffusion MRI Signal Reconstruction with Continuous Samplings (DISCUS) project

    Python 1 0 0 0 Updated Apr 22, 2024
  • BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 11 MIT 9 0 0 Updated Apr 15, 2024
  • Python 0 MIT 0 0 0 Updated Apr 9, 2024
  • head-motion-from-MRI Public

    Code for the paper "Estimating Head Motion from MRI", which predicts motion scores directly from MRI images.

    Python 2 Apache-2.0 2 0 0 Updated Mar 22, 2024
  • hipsta Public

    HIPSTA - a python package for hippocampal shape and thickness analysis

    Python 1 MIT 0 1 0 Updated Mar 6, 2024
  • fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 50 MIT 13 3 0 Updated Mar 5, 2024

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