update links (#280)

Co-authored-by: Andrew Moodie <amoodie@utexas.edu>

docs/source/examples/modelzoo.rst

@@ -15,15 +15,15 @@ Vegetation" model presented in `Lauzon and Murray (2018) <https://doi.org/10.102
 
 MississippiFaultsModel
 ----------------------
-Link: `MississippiFaultsModel <https://github.com/amoodie/paper_resources/blob/master/Moodie_faultingsubsidence/model/scripts/mississippi_faults.py>`_
+Link: `MississippiFaultsModel <https://github.com/amoodie/paper_resources/blob/main/Moodie_faultingsubsidence/model/scripts/mississippi_faults.py>`_
 
 This implementation of the *pyDeltaRCM* model is used in the paper
 `Moodie and Passalacqua (2021) <https://doi.org/10.1029/2021GL095053>`_ to
 simulate a Mississippi River-like delta.
 
 SelengaModel
 ------------
-Link: `SelengaModel <https://github.com/amoodie/paper_resources/blob/master/Moodie_faultingsubsidence/model/scripts/selenga_faults.py>`_
+Link: `SelengaModel <https://github.com/amoodie/paper_resources/blob/main/Moodie_faultingsubsidence/model/scripts/selenga_faults.py>`_
 
 This implementation of the *pyDeltaRCM* model is used in the paper
 `Moodie and Passalacqua (2021) <https://doi.org/10.1029/2021GL095053>`_ to

docs/source/index.rst

@@ -24,7 +24,7 @@ Project information
     :target: https://github.com/DeltaRCM/pyDeltaRCM
 
 .. image:: https://joss.theoj.org/papers/10.21105/joss.03398/status.svg
-   :target: https://doi.org/10.21105/joss.03398
+   :target: https://joss.theoj.org/papers/10.21105/joss.03398
 
 .. toctree::
    :maxdepth: 1

docs/source/meta/installing.rst

@@ -15,7 +15,7 @@ We describe installation flavors for both users and developers below.
 
     If you are looking to make any modifications to the model source code, you should follow the developer instructions.
 
-We suggest using the Anaconda Python distribution, which you can obtain via `the project website <https://www.anaconda.com/products/individual>`_.
+We suggest using the Anaconda Python distribution, which you can obtain via `the project website <https://www.anaconda.com/download>`_.
 
 Before proceeding, you may wish to create a virtual environment for the *pyDeltaRCM* project.
 With Anaconda on Linux:
@@ -26,7 +26,7 @@ With Anaconda on Linux:
     $ conda activate deltarcm
 
 For more informtaion, see `this guide <https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#activating-an-environment>`_ for help on creating and activating a virtual environment with Anaconda on other platforms.
-See `this helpful guide <https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/#creating-a-virtual-environment>`_ for creating virtual environments with `venv` if you do not use Anaconda.
+See `this helpful guide <https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/>`_ for creating virtual environments with `venv` if you do not use Anaconda.
 
 
 User installation
@@ -53,7 +53,7 @@ This will allow you to submit suggestions and contribute to *pyDeltaRCM*.
 
 .. note::
 
-    You do not *need* to create a fork if your are just testing, but it may save you time and headache down the road. If you choose not to, just use the main repository url below (https://github.com/DeltaRCM/pyDeltaRCM.git).
+    You do not *need* to create a fork if your are just testing, but it may save you time and headache down the road. If you choose not to, just use the main repository url below (https://github.com/DeltaRCM/pyDeltaRCM).
 
 First, you will need to `install git <https://git-scm.com/book/en/v2/Getting-Started-Installing-Git>`_  if you do not already have it.
 Then, download or clone your fork of the project:

docs/source/meta/usedby.rst

@@ -21,4 +21,4 @@ Presentations
 Other
 -----
 
-[1] Hariharan, Jayaram. "Exploring *pyDeltaRCM*: A Collection of Numerical Experiments." Zenodo v0.1 (2022), https://zenodo.org/record/7315646.
+[1] Hariharan, Jayaram. "Exploring *pyDeltaRCM*: A Collection of Numerical Experiments." Zenodo v0.1 (2022), https://zenodo.org/records/7315646.