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ReleaseNotes.html
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ReleaseNotes.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<title>Spatial Kappa Translator Release Notes v2.0.1</title>
</head>
<body>
<h3 style="text-align: center;">Spatial Kappa Translator Release Notes v2.0.7</h3>
<p style="text-align: center;">08-09-2012</p>
<p style="text-align: center;">Copyright © 2012 DemonSoft Ltd
<<a href="http://www.demonsoft.org/">http://www.demonsoft.co.uk/</a>></p>
<h4>Summary of additions for v2.0.7</h4>
<p>Improved model validation and parse error handling.</p>
<p>Voxel observations now only count observable matching complex subsets entirely enclosed in a voxel (although the complex itself may extend
beyond that voxel.</p>
<h4>Summary of additions for v2.0.6</h4>
<p>Added voxel based observations to output.</p>
<h4>Summary of additions for v2.0.5</h4>
<p>Added variable transition rates based on the composition of the complexes selected for the transition.</p>
<h4>Summary of additions for v2.0.4</h4>
<p>Can now use selected predefined compartments and channels, in 2 and 3D.</p>
<h4>Summary of additions for v2.0.3</h4>
<p>Interim release.</p>
<h4>Summary of additions for v2.0.2</h4>
<p>Interim release.</p>
<h4>Summary of additions for v2.0.1</h4>
<p>%channel: declarations are now more consistent and logical. Can be composed of multiple forward only
expressions. No need to have multiple declarations using the same channel name.</p>
<h4>Summary of additions for v2.0.0</h4>
<p>%link: declarations are now %channel: declarations.</p>
<p>Channel and compartments names are now ids rather than labels, so no need to use single quotes.</p>
<p>%init:, %obs:, %var: declarations and transform rules can now specify location. Agents can also specify location.</p>
<p>Agent links can specify channel to define multi-voxel complexes.</p>
<p>An issues and bug tracker will appear eventually. For now, please
email any bug reports or feature requests to <a
href="mailto:spatialkappa@demonsoft.org">spatialkappa@demonsoft.org</a>.</p>
<h4>Known issues</h4>
<p>Validation of invalid models not catching all errors cleanly - requires some extension.</p>
<p>Transform rules limited to single merged complex (on left or right).</p>
<p>Issue handling the transform rule A() -> B() @ 1.0</p>
<p>When specifying channel locations ensure there is a space before the '-' operator, eg. cytosol[x][y -1].</p>
</body>
</html>