Add Python 3.11 support

.azure-pipelines/azure-pipelines.yml

@@ -87,6 +87,8 @@ stages:
           PYTHON_VERSION: 3.9
         python310:
           PYTHON_VERSION: 3.10
+        python311:
+          PYTHON_VERSION: 3.11
     steps:
     - template: ci.yml
 

.azure-pipelines/ci.yml

@@ -27,7 +27,10 @@ steps:
   displayName: Install package
 
 - script: |
-    PYTHONDEVMODE=1 pytest -ra --cov=tristan --cov-report=xml --cov-branch
+    pip install pytest
+
+    pip install pytest-cov
+    python -m pytest -ra --cov=tristan --cov-report=xml --cov-branch
   displayName: Run tests
   workingDirectory: $(Pipeline.Workspace)/src
 

.pre-commit-config.yaml

@@ -9,7 +9,7 @@ repos:
 
 # Automatically sort imports with isort
 - repo: https://github.com/pycqa/isort
-  rev: 5.11.4
+  rev: 5.12.0
   hooks:
   - id: isort
 

CHANGELOG.md

@@ -4,6 +4,7 @@
 - Fixed the axis dimensions for `images pp`.
 - Added timestamp check and warning on triggers if they happen before/after shutters in `find-tristan-triggers`.
 - Added `images serial` for gated access binning of events.
+- Added python3.11 support.
 
 ## 0.2.1
 - Added dagnostic tool `valid-events` for checking that there are events recorded after the shutter open signal in case the binned image is blank(asynchronicity issue). Also, a couple of small improvements on the other diagnostic tools.

pyproject.toml

@@ -1,5 +1,5 @@
 [build-system]
-requires = ["setuptools >= 40.6.0", "wheel"]
+requires = ["setuptools<57", "wheel==0.33.1"]
 build-backend = "setuptools.build_meta"
 
 [tool.isort]

requirements.txt

@@ -1,8 +1,8 @@
 dask==2022.11.1
 distributed==2022.11.1
-h5py==3.7.0
+h5py==3.8.0
 hdf5plugin==4.0.1
-nexgen==0.6.23
+nexgen==0.6.27
 numpy==1.23.5
 pandas==1.5.2
 Pint==0.20.1

requirements_dev.txt

@@ -1,8 +1,8 @@
 dask==2022.11.1
 distributed==2022.11.1
-h5py==3.7.0
+h5py==3.8.0
 hdf5plugin==4.0.1
-nexgen==0.6.23
+nexgen==0.6.27
 numpy==1.23.5
 pandas==1.5.2
 Pint==0.20.1

requirements_doc.txt

@@ -1,11 +1,13 @@
 dask==2022.11.1
 distributed==2022.11.1
-h5py==3.7.0
+h5py==3.8.0
 hdf5plugin==4.0.1
-nexgen==0.6.23
+nexgen==0.6.27
 numpy==1.23.5
 pandas==1.5.2
 Pint==0.20.1
+pytest==7.1.2
+pytest-cov==3.0.0
 Sphinx==6.2.0
 sphinx-rtd-theme==1.2.0
 zarr==2.13.3

setup.cfg

@@ -17,6 +17,7 @@ classifiers =
     Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
+    Programming Language :: Python :: 3.11
 keywords =
     x-ray
     tristan
@@ -30,8 +31,8 @@ project-urls =
 include_package_data = True
 install_requires =
     dask[array,diagnostics,distributed] != 2021.3.*
-    h5py
-    hdf5plugin
+    h5py>=3.8
+    hdf5plugin>=4.0.1
     nexgen >= 0.6.20
     numpy
     pandas
@@ -43,9 +44,26 @@ package_dir =
 python_requires = >=3.8
 zip_safe = False
 
+[options.extras_require]
+dev = 
+    black
+    pytest-cov
+    pytest-random-order
+    pre-commit
+    flake8
+    build
+
 [options.packages.find]
 where = src
 
+[isort]
+profile=black
+float_to_top=true
+
+[flake8]
+max-line-length = 88
+extend-ignore = E203,E266,E402,E501,W503,E741
+
 [options.entry_points]
 console_scripts =
     apply-flat-field = tristan.command_line.apply_flat_field:main