GitHub - Digital-C-Fiber/NEURON-C-fiber: simultion of C-fiber with the simulation environment NEURON

Digital-C-Fiber / NEURON-C-fiber Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

simultion of C-fiber with the simulation environment NEURON

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
MOD_Tigerholm		MOD_Tigerholm
ReadMe		ReadMe
dataProcessing.py		dataProcessing.py
defineCell.py		defineCell.py
evaluate.py		evaluate.py
main.py		main.py
particleSwarm2.py		particleSwarm2.py
particleSwarm2GEPSO.py		particleSwarm2GEPSO.py
particleSwarm2RPSO.py		particleSwarm2RPSO.py
plot.py		plot.py
run.py		run.py
stimulationProtocols.py		stimulationProtocols.py

Repository files navigation

File structure:
files needed for model:
main: nerve cell is created, simulation is run and results are saved
run: example how to run the model
defineCell: functions that are needed in main for the creation of the cell
dataProcessing: functions for data processing: getFilename, getData and calculateLatency
stimulationProtocols: definition of several frequently used stimulation protocols

files for optimization:
particleSwarm2, particleSwarm2GEPSO, particleSwarm2RPSO: different implementations of the particle swarm optimization
evaluate: functions for the evaluation of the particles

plot: functions for plotting