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Hi Sir
I compiled the HLA-LA on my Ubuntu 20 EC2 with 16 core and 128G ram.
It passed the test using the command ../bin/HLA-LA --action testBinary
But got error during prepareGraph PRG_MHC_GRCh38_withIMGT. Following is the error message:
[ Thu Jan 5 04:30:34 2023 ] Read graph from ../graphs/PRG_MHC_GRCh38_withIMGT
30200000/30207167[E]
[ Thu Jan 5 04:37:05 2023 ] done
[ Thu Jan 5 04:38:04 2023 ] Now serialize (pre-gap-pathindexed) graph to ../graphs/PRG_MHC_GRCh38_withIMGT/serializedGRAPH_preGapPathIndex
Segmentation fault (core dumped)
I'm sure I have enough hard driver space and RAM.
bwa = 0.7.17-r1188
samtools=1.13
picard: installed by apt-get install picard-tools
Could you help me to fix the issue?
Thank you so much
The text was updated successfully, but these errors were encountered:
Hi Sir
I compiled the HLA-LA on my Ubuntu 20 EC2 with 16 core and 128G ram.
It passed the test using the command ../bin/HLA-LA --action testBinary
But got error during prepareGraph PRG_MHC_GRCh38_withIMGT. Following is the error message:
[ Thu Jan 5 04:30:34 2023 ] Read graph from ../graphs/PRG_MHC_GRCh38_withIMGT
30200000/30207167[E]
[ Thu Jan 5 04:37:05 2023 ] done
[ Thu Jan 5 04:38:04 2023 ] Now serialize (pre-gap-pathindexed) graph to ../graphs/PRG_MHC_GRCh38_withIMGT/serializedGRAPH_preGapPathIndex
Segmentation fault (core dumped)
I'm sure I have enough hard driver space and RAM.
bwa = 0.7.17-r1188
samtools=1.13
picard: installed by apt-get install picard-tools
Could you help me to fix the issue?
Thank you so much
The text was updated successfully, but these errors were encountered: