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In this version, GT-Tool supports value tracking (primitive values and objects), web frameworks, multiple file analysis in one execution and many other functionalities that are explained in detail in the dissertation document.
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To run an application/program, check the ParserRun.java file (main entry point to give the tool the necessary information to analyse the application) which contains an example there. Can also go through the experimentalEvaluationTests folder to see how the tests were made!
Will update this README if needed.