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This code extracts all nucleotide sequences in regions within an alignment file that have a called TFBS, which was calculated from map_motif_2
This code is for extracted TFBS from alignment files.
Neural Network of enhancer regions
Creates a DNA sequence that has motifs distributed at a specified frequency seperated by a neutral sequence that purposefully does not contain the motifs.
Asking questions about TFBS presence and enhancer function
Map frequency matrices on sequence alignments.