Merged T lymphocyte deficiency into T cell deficiency

src/ontology/doid-edit.owl

@@ -1,4 +1,4 @@
-Prefix(:=<http://purl.obolibrary.org/obo/doid.owl/>)
+Prefix(:=<http://purl.obolibrary.org/obo/doid.owl#>)
 Prefix(dc:=<http://purl.org/dc/elements/1.1/>)
 Prefix(obo:=<http://purl.obolibrary.org/obo/>)
 Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
@@ -71825,10 +71825,16 @@ SubClassOf(obo:DOID_112 obo:DOID_866)
 
 # Class: obo:DOID_11200 (T cell deficiency)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/T_cell_deficiency") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/18755724") obo:IAO_0000115 obo:DOID_11200 "A primary immunodeficiency disease that is characterized by decreased numbers of circulating or functioning T cells.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/T_cell_deficiency") Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/18755723") obo:IAO_0000115 obo:DOID_11200 "A primary immunodeficiency disease that is characterized by decreased numbers of circulating or functioning T cells.")
+AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_11200 "DOID:613")
+AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11200 "NCI2004_11_17:C27145")
+AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11200 "NCI:C27145")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11200 "NCI:C27872")
+AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11200 "UMLS_CUI:C1274233")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_11200 "UMLS_CUI:C1333147")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_11200 "T cell immunodeficiency")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_11200 "T lymphocyte deficiency")
+AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_11200 "T lymphocyte immunodeficiency")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_11200 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_11200 "DOID:11200")
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_11200 doid:NCIthesaurus)
@@ -109758,7 +109764,6 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_2914 doid:DO_AGR_slim)
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_2914 doid:DO_FlyBase_slim)
 AnnotationAssertion(oboInOwl:inSubset obo:DOID_2914 doid:DO_MGI_slim)
 AnnotationAssertion(rdfs:label obo:DOID_2914 "immune system disease")
-EquivalentClasses(obo:DOID_2914 ObjectIntersectionOf(obo:DOID_4 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0002405)))
 SubClassOf(obo:DOID_2914 obo:DOID_7)
 
 # Class: obo:DOID_2916 (hypersensitivity reaction type IV disease)
@@ -141056,19 +141061,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:DOID_6128 doid:NCIthesaurus)
 AnnotationAssertion(rdfs:label obo:DOID_6128 "gliomatosis cerebri")
 SubClassOf(obo:DOID_6128 obo:DOID_1319)
 
-# Class: obo:DOID_613 (T lymphocyte deficiency)
+# Class: obo:DOID_613 (obsolete T lymphocyte deficiency)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://www.ncbi.nlm.nih.gov/pubmed/18755723") obo:IAO_0000115 obo:DOID_613 "A T cell deficiency that is characterized by decreased functioning of the T lymphocytes, which are drivers of cell-mediated immunity, resulting in increased susceptibility to intracellular bacterial, viral, and fungal infections, and has_material_basis_in a primary immunodeficiency or secondary to chronic infection, illness, or drugs.")
-AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_613 "NCI2004_11_17:C27145")
-AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_613 "NCI:C27145")
-AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_613 "UMLS_CUI:C1274233")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_613 "T-lymphocyte deficiency")
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_613 "T-lymphocyte immunodeficiency")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_613 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_613 "DOID:613")
-AnnotationAssertion(oboInOwl:inSubset obo:DOID_613 doid:NCIthesaurus)
-AnnotationAssertion(rdfs:label obo:DOID_613 "T lymphocyte deficiency")
-SubClassOf(obo:DOID_613 obo:DOID_11200)
+AnnotationAssertion(rdfs:label obo:DOID_613 "obsolete T lymphocyte deficiency")
+AnnotationAssertion(owl:deprecated obo:DOID_613 "true"^^xsd:boolean)
 
 # Class: obo:DOID_6132 (bronchitis)