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Restore obsolete classes (deleted previously)
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These classes were deleted years ago when the ontology was still
maturing. Their removal has not caused any known issues. This
action is simply to prevent possible curation issues arising from
automated class numbering by Protege.
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@allenbaron
allenbaron committed Dec 4, 2023
1 parent e8e9a60 commit b9dd8ae
Showing 1 changed file with 56 additions and 0 deletions.
56 changes: 56 additions & 0 deletions src/ontology/symp-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -309,6 +309,7 @@ Declaration(Class(obo:SYMP_0000284))
Declaration(Class(obo:SYMP_0000285))
Declaration(Class(obo:SYMP_0000286))
Declaration(Class(obo:SYMP_0000287))
Declaration(Class(obo:SYMP_0000288))
Declaration(Class(obo:SYMP_0000289))
Declaration(Class(obo:SYMP_0000290))
Declaration(Class(obo:SYMP_0000291))
Expand Down Expand Up @@ -646,6 +647,7 @@ Declaration(Class(obo:SYMP_0000622))
Declaration(Class(obo:SYMP_0000623))
Declaration(Class(obo:SYMP_0000624))
Declaration(Class(obo:SYMP_0000625))
Declaration(Class(obo:SYMP_0000626))
Declaration(Class(obo:SYMP_0000627))
Declaration(Class(obo:SYMP_0000628))
Declaration(Class(obo:SYMP_0000629))
Expand Down Expand Up @@ -686,6 +688,8 @@ Declaration(Class(obo:SYMP_0000663))
Declaration(Class(obo:SYMP_0000664))
Declaration(Class(obo:SYMP_0000665))
Declaration(Class(obo:SYMP_0000666))
Declaration(Class(obo:SYMP_0000667))
Declaration(Class(obo:SYMP_0000668))
Declaration(Class(obo:SYMP_0000669))
Declaration(Class(obo:SYMP_0000670))
Declaration(Class(obo:SYMP_0000671))
Expand Down Expand Up @@ -725,6 +729,7 @@ Declaration(Class(obo:SYMP_0000704))
Declaration(Class(obo:SYMP_0000705))
Declaration(Class(obo:SYMP_0000706))
Declaration(Class(obo:SYMP_0000707))
Declaration(Class(obo:SYMP_0000708))
Declaration(Class(obo:SYMP_0000709))
Declaration(Class(obo:SYMP_0000710))
Declaration(Class(obo:SYMP_0000711))
Expand Down Expand Up @@ -900,6 +905,7 @@ Declaration(Class(obo:SYMP_0000880))
Declaration(Class(obo:SYMP_0000881))
Declaration(Class(obo:SYMP_0000882))
Declaration(Class(obo:SYMP_0000883))
Declaration(Class(obo:SYMP_0000884))
Declaration(Class(obo:SYMP_0000885))
Declaration(Class(obo:SYMP_0000886))
Declaration(Class(obo:SYMP_0000887))
Expand Down Expand Up @@ -3336,6 +3342,14 @@ AnnotationAssertion(oboInOwl:id obo:SYMP_0000287 "SYMP:0000287")
AnnotationAssertion(rdfs:label obo:SYMP_0000287 "arrhythmia")
SubClassOf(obo:SYMP_0000287 obo:SYMP_0000528)

# Class: obo:SYMP_0000288 (obsolete fluctuation of heart rate)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000288 obo:SYMP_0000287)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000288 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000288 "SYMP:0000288")
AnnotationAssertion(rdfs:label obo:SYMP_0000288 "obsolete fluctuation of heart rate")
AnnotationAssertion(owl:deprecated obo:SYMP_0000288 "true"^^xsd:boolean)

# Class: obo:SYMP_0000289 (eczema)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=eczema") obo:IAO_0000115 obo:SYMP_0000289 "A skin and integumentary tissue symptom that is characterized by an inflammatory condition of the skin with redness, itching, and oozing vesicular lesions, which become scaly, crusted, or hardened.")
Expand Down Expand Up @@ -6547,6 +6561,14 @@ AnnotationAssertion(oboInOwl:id obo:SYMP_0000625 "SYMP:0000625")
AnnotationAssertion(rdfs:label obo:SYMP_0000625 "conscious disturbance")
SubClassOf(obo:SYMP_0000625 obo:SYMP_0000482)

# Class: obo:SYMP_0000626 (obsolete myalgia)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000626 obo:SYMP_0019161)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000626 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000626 "SYMP:0000626")
AnnotationAssertion(rdfs:label obo:SYMP_0000626 "obsolete myalgia"@en)
AnnotationAssertion(owl:deprecated obo:SYMP_0000626 "true"^^xsd:boolean)

# Class: obo:SYMP_0000627 (disturbed vision)

AnnotationAssertion(oboInOwl:hasExactSynonym obo:SYMP_0000627 "disturbance of vision")
Expand Down Expand Up @@ -6851,6 +6873,23 @@ AnnotationAssertion(oboInOwl:id obo:SYMP_0000666 "SYMP:0000666")
AnnotationAssertion(rdfs:label obo:SYMP_0000666 "abnormal behavior")
SubClassOf(obo:SYMP_0000666 obo:SYMP_0019182)

# Class: obo:SYMP_0000667 (obsolete heart rhythm symptom)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000667 obo:SYMP_0000287)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000667 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000667 "SYMP:0000667")
AnnotationAssertion(rdfs:label obo:SYMP_0000667 "obsolete heart rhythm symptom")
AnnotationAssertion(owl:deprecated obo:SYMP_0000667 "true"^^xsd:boolean)

# Class: obo:SYMP_0000668 (obsolete abnormal heart rhythms)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000668 obo:SYMP_0000287)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:SYMP_0000668 "abnormal heart beats")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000668 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000668 "SYMP:0000668")
AnnotationAssertion(rdfs:label obo:SYMP_0000668 "obsolete abnormal heart rhythms")
AnnotationAssertion(owl:deprecated obo:SYMP_0000668 "true"^^xsd:boolean)

# Class: obo:SYMP_0000669 (abnormal hemistanding)

AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000669 "symptoms")
Expand Down Expand Up @@ -7143,6 +7182,14 @@ AnnotationAssertion(oboInOwl:id obo:SYMP_0000707 "SYMP:0000707")
AnnotationAssertion(rdfs:label obo:SYMP_0000707 "flaccid muscle tone")
SubClassOf(obo:SYMP_0000707 obo:SYMP_0000183)

# Class: obo:SYMP_0000708 (obsolete gas production)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000708 obo:SYMP_0000509)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000708 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000708 "SYMP:0000708")
AnnotationAssertion(rdfs:label obo:SYMP_0000708 "obsolete gas production"@en)
AnnotationAssertion(owl:deprecated obo:SYMP_0000708 "true"^^xsd:boolean)

# Class: obo:SYMP_0000709 (granulomatous inflammation)

AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000709 "symptoms")
Expand Down Expand Up @@ -8489,6 +8536,15 @@ AnnotationAssertion(oboInOwl:id obo:SYMP_0000883 "SYMP:0000883")
AnnotationAssertion(rdfs:label obo:SYMP_0000883 "very high fever")
SubClassOf(obo:SYMP_0000883 obo:SYMP_0000882)

# Class: obo:SYMP_0000884 (obsolete recurrent fever)

AnnotationAssertion(obo:IAO_0100001 obo:SYMP_0000884 obo:SYMP_0000243)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:SYMP_0000884 "symptoms")
AnnotationAssertion(oboInOwl:id obo:SYMP_0000884 "SYMP:0000884")
AnnotationAssertion(rdfs:comment obo:SYMP_0000884 "The obsolete label is a best guess based on the addition of SYMP:0000884 as an alternative ID for SYMP:0000237 in revision 637 of the Gemina project SVN repository (https://sourceforge.net/p/gemina/code/637/tree//trunk/Gemina/ontologies/gemina_symptom.obo?diff=51796e7f5fcbc979b911aaf7:636). The original class was deprecated and removed before creation of that SVN repository (< 2007-08-09).")
AnnotationAssertion(rdfs:label obo:SYMP_0000884 "obsolete recurrent fever"@en)
AnnotationAssertion(owl:deprecated obo:SYMP_0000884 "true"^^xsd:boolean)

# Class: obo:SYMP_0000885 (obsolete severe temperature increase)

AnnotationAssertion(oboInOwl:created_by obo:SYMP_0000885 "lschriml")
Expand Down

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