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## tic Circle CI template: linux-deploy | ||
## revision date: 2022-08-28 | ||
version: 2.1 | ||
jobs: | ||
r-release: | ||
machine: | ||
image: ubuntu-2204:current | ||
resource_class: large | ||
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steps: | ||
- checkout | ||
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# create a unique env var for the cache. Unfortunately normal env vars | ||
# are not picked up by the cache, therefore this workaround is needed. | ||
# See https://discuss.circleci.com/t/cannot-use-circle-yml-environment-variables-in-cache-keys/10994/7 | ||
- run: echo "$(Rscript -e 'cat(format(getRversion()))')" > /tmp/R_version | ||
- run: echo "v1" > /tmp/cache_vers # Increment this to invalidate cache | ||
- restore_cache: | ||
key: R-package-library-{{ checksum "/tmp/cache_vers" }}-{{ checksum "/tmp/R_version" }} | ||
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# install deps and check pkg --------------------------------------------- | ||
- run: | ||
name: "[r-release] Install dependencies" | ||
command: | | ||
sudo apt update -qq | ||
sudo apt install -y software-properties-common dirmngr | ||
sudo add-apt-repository -y ppa:ubuntugis/ubuntugis-unstable | ||
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc | ||
sudo add-apt-repository -y "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" | ||
sudo add-apt-repository -y ppa:c2d4u.team/c2d4u4.0+ | ||
sudo apt update && sudo apt install -y ccache pandoc libgit2-dev libharfbuzz-dev \ | ||
libfribidi-dev libprotoc-dev libprotobuf-dev libv8-dev librsvg2-dev libmpfr-dev \ | ||
libnlopt-dev libgdal-dev libproj-dev r-base r-cran-devtools | ||
R -q -e 'if (!dir.exists("~/R/library")) dir.create("~/R/library", recursive = TRUE)' | ||
echo -e 'options(Ncpus = 4, repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile | ||
export R_HOME=`R RHOME` | ||
echo -e ".libPaths(c('$HOME/R/library', '/usr/lib/R/site-library', '/usr/lib/R/library'))" | \ | ||
sudo tee -a $R_HOME/etc/Rprofile.site | ||
R -q -e 'remotes::install_github("Displayr/flipDevTools")' | ||
R -q -e 'options(warn = 2); devtools::install_deps(dependencies = TRUE)' | ||
- save_cache: | ||
key: R-package-library-{{ checksum "/tmp/cache_vers" }}-{{ checksum "/tmp/R_version" }} | ||
paths: | ||
- ../R/library | ||
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- run: | ||
name: "Check package" | ||
command: R -q -e 'rcmdcheck::rcmdcheck(args = c("--no-manual", "--ignore-vignettes", "--no-tests"), build_args = c("--no-build-vignettes"))' | ||
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- run: | ||
name: "Run unit tests" | ||
no_output_timeout: 80m | ||
command: R -e 'q(status = flipDevTools::RunTestsOnCircleCI(), save = "no")' | ||
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- store_test_results: | ||
path: testthat.xml | ||
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- store_artifacts: | ||
path: testthat.xml | ||
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workflows: | ||
build-and-check-R-package: | ||
jobs: | ||
- r-release: | ||
context: | ||
- r_packages |