Merge #2036 (DougBurke) - Update sherpa citations #117
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| name: Conda Deployments | |
| #Only run when updating main, ciaox, or release/... branches (no PRs). | |
| #With check-skip job, we skip build on main/ciaox if directly tagged as a release. | |
| # (To only build releases on the release branch) | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - ciaox | |
| - 'release/**' | |
| #Reduces GH Action duplication: | |
| # Cancels the previous pipeline for this ref it is still running | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| sherpa_label: dev | |
| conda_loc: ${{ github.workspace }}/conda_loc | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| check-skip: | |
| name: Skip the Pipeline if tagged and NOT on the release branch | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'sherpa/sherpa' | |
| outputs: | |
| skip_pipeline: ${{ steps.skip_check.outputs.skip_pipeline }} | |
| steps: | |
| #Checkout the code with a depth of 0 to grab the tags/branches as well | |
| - name: Checkout Code | |
| uses: actions/checkout@v4.1.1 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check build number | |
| id: skip_check | |
| run: | | |
| #BUILD_NUM not passed to future jobs to maintain a separate Git sanity check | |
| BUILD_NUM="$(git describe --tags --always | awk '{split($0,a,"-"); print a[2]}')" | |
| echo "BUILD_NUM=${BUILD_NUM}" | |
| if [ -z "${BUILD_NUM}" ] && [ "${GITHUB_REF:0:20}" != "refs/heads/releases/" ] ; then | |
| #Skip the build/test/deploy if directly on a tag and NOT on a release branch | |
| echo "skip_pipeline=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "skip_pipeline=false" >> $GITHUB_OUTPUT | |
| fi | |
| #Linux and macOS build separate as we can't use container option dynamically | |
| # based on it being defined in the matrix or not. | |
| build-linux: | |
| name: Linux Python ${{ matrix.python-version }} | |
| if: ${{ needs.check-skip.outputs.skip_pipeline }} == "false" | |
| needs: ["check-skip"] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{ matrix.image }} | |
| env: | |
| GITHUB_WORKSPACE: ${{ github.workspace }} | |
| volumes: | |
| - ${{ github.workspace }}:${{ github.workspace }} | |
| strategy: | |
| matrix: | |
| image: ["redhat/ubi8"] | |
| conda-os: ["Linux-x86_64"] | |
| os-dir: ["linux-64"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Install git and diff | |
| run: yum install -y -q git diffutils | |
| - name: Conda Setup | |
| env: | |
| CONDA_OS: ${{ matrix.conda-os }} | |
| run: | | |
| curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-${CONDA_OS}.sh -o conda-installer.sh | |
| bash conda-installer.sh -b -p ${conda_loc} | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| conda create -yq -n builder conda-build conda-verify | |
| #Checkout the code with a depth of 0 to grab the tags/branches as well | |
| - name: Checkout Code | |
| uses: actions/checkout@v4.1.1 | |
| with: | |
| fetch-depth: 0 | |
| path: sherpa | |
| - name: Build Sherpa | |
| env: | |
| SHERPA_PYTHON_VERSION: ${{ matrix.python-version }} | |
| run: | | |
| cd sherpa | |
| export SHERPA_FULL_VERSION=$(git describe --tags --always) | |
| export SHERPA_VERSION=$(echo $SHERPA_FULL_VERSION | awk '{split($0,a,"-"); print a[1]}') | |
| SHERPA_BUILD_NUMBER=$(echo $SHERPA_FULL_VERSION | awk '{split($0,a,"-"); print a[2]}') | |
| export SHERPA_BUILD_NUMBER="${SHERPA_BUILD_NUMBER:-0}" | |
| echo "Version: ${SHERPA_VERSION} Build Number: ${SHERPA_BUILD_NUMBER}" | |
| if [ -z ${SHERPA_VERSION} ] || [ -z ${SHERPA_BUILD_NUMBER} ] ; then | |
| echo "Error: SHERPA_VERSION or SHERPA_BUILD_NUMBER not set." | |
| exit 1 | |
| fi | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| conda activate builder | |
| echo "conda build --python ${SHERPA_PYTHON_VERSION} --output-folder ${GITHUB_WORKSPACE}/packages recipes/conda" | |
| conda build --python ${SHERPA_PYTHON_VERSION} --output-folder ${GITHUB_WORKSPACE}/packages recipes/conda | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.os-dir }}-${{ matrix.python-version }} | |
| path: ${{ github.workspace }}/packages/*/sherpa*bz2 | |
| if-no-files-found: error | |
| retention-days: 3 | |
| build-macos: | |
| name: MacOS Python ${{ matrix.python-version }} | |
| if: github.repository == 'sherpa/sherpa' && ${{ needs.check-skip.outputs.skip_pipeline }} == "false" | |
| needs: ["check-skip"] | |
| runs-on: ${{ matrix.os-type }} | |
| strategy: | |
| matrix: | |
| os-type: ["macos-11"] | |
| conda-os: ["MacOSX-x86_64"] | |
| os-dir: ["osx-64"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| env: | |
| CONDA_BUILD_SYSROOT: /opt/MacOSX10.14.sdk | |
| steps: | |
| - name: Conda Setup | |
| env: | |
| CONDA_OS: ${{ matrix.conda-os }} | |
| run: | | |
| curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-${CONDA_OS}.sh -o conda-installer.sh | |
| bash conda-installer.sh -b -p ${conda_loc} | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| conda create -yq -n builder conda-build conda-verify | |
| - name: macOS 10.14 SDK | |
| if: ${{ matrix.conda-os == 'MacOSX-x86_64' }} | |
| run: | | |
| #Download the MacOS 10.14 SDK to the CONDA_BUILD_SYSROOT location for the Conda Compilers to work | |
| mkdir -p /opt | |
| curl -L https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.14.sdk.tar.xz -o MacOSX10.14.sdk.tar.xz | |
| if [[ $? -ne 0 ]]; then | |
| echo "MacOS 10.14 SDK download failed" | |
| fi | |
| sudo tar -C /opt -xf MacOSX10.14.sdk.tar.xz | |
| - name: Checkout Code | |
| uses: actions/checkout@v4.1.1 | |
| with: | |
| fetch-depth: 0 | |
| path: sherpa | |
| - name: Build Sherpa | |
| env: | |
| SHERPA_PYTHON_VERSION: ${{ matrix.python-version }} | |
| run: | | |
| cd sherpa | |
| export SHERPA_FULL_VERSION=$(git describe --tags --always) | |
| export SHERPA_VERSION=$(echo $SHERPA_FULL_VERSION | awk '{split($0,a,"-"); print a[1]}') | |
| SHERPA_BUILD_NUMBER=$(echo $SHERPA_FULL_VERSION | awk '{split($0,a,"-"); print a[2]}') | |
| export SHERPA_BUILD_NUMBER="${SHERPA_BUILD_NUMBER:-0}" | |
| echo "Version: ${SHERPA_VERSION} Build Number: ${SHERPA_BUILD_NUMBER}" | |
| if [ -z ${SHERPA_VERSION} ] || [ -z ${SHERPA_BUILD_NUMBER} ] ; then | |
| echo "Error: SHERPA_VERSION or SHERPA_BUILD_NUMBER not set" | |
| exit 1 | |
| fi | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| conda activate builder | |
| echo "conda build --python ${SHERPA_PYTHON_VERSION} --output-folder ${GITHUB_WORKSPACE}/packages recipes/conda" | |
| conda build --python ${SHERPA_PYTHON_VERSION} --output-folder ${GITHUB_WORKSPACE}/packages recipes/conda | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.os-dir }}-${{ matrix.python-version }} | |
| path: ${{ github.workspace }}/packages/*/sherpa*bz2 | |
| if-no-files-found: error | |
| retention-days: 3 | |
| #The jobs below should not run if "build-linux" or "build-macos" are skipped. | |
| #If they try to, then the "pre-deploy-test" stage will fail anyway and the deployment will NOT be attempted. | |
| #If the "pre-deploy-test" stage is attempted when it shouldn't be, GH Actions might have updated the | |
| # condition for skipping a "needs" option. | |
| pre-deploy-test: | |
| needs: ["build-linux", "build-macos"] | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - name: Latest Ubuntu Pre-Deploy Test | |
| os: ubuntu-latest | |
| conda-os: "Linux-x86_64" | |
| os-dir: "linux-64" | |
| - name: Latest MacOS Pre-Deploy Test | |
| os: macos-latest | |
| conda-os: "MacOSX-x86_64" | |
| os-dir: "osx-64" | |
| steps: | |
| #Download all artifacts | |
| - uses: actions/download-artifact@v4 | |
| id: download | |
| with: | |
| pattern: ${{ matrix.os-dir }}-* | |
| path: packages | |
| merge-multiple: true | |
| - name: Conda Setup & Index Artifacts | |
| env: | |
| CONDA_OS: ${{ matrix.conda-os }} | |
| working-directory: ${{ github.workspace }} | |
| run: | | |
| curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-${CONDA_OS}.sh -o conda-installer.sh | |
| bash conda-installer.sh -b -p ${conda_loc} | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| conda install conda-build | |
| echo "Packages downloaded here: ${{steps.download.outputs.download-path}}" | |
| echo "ls packages/*/sherpa*.bz2" | |
| ls packages/*/sherpa*.bz2 | |
| echo "conda index packages" | |
| conda index packages | |
| - name: Run the tests | |
| working-directory: ${{ github.workspace }} | |
| run: | | |
| source ${conda_loc}/etc/profile.d/conda.sh | |
| curl -LO -k https://github.com/sherpa/sherpa-test-data/archive/main.zip | |
| echo "conda create -n test39 --yes -q -c file://$(pwd)/packages python=3.9 astropy sherpa matplotlib" | |
| conda create -n test39 --yes -q -c file://$(pwd)/packages python=3.9 astropy sherpa matplotlib | |
| conda activate test39 | |
| pip install main.zip | |
| sherpa_smoke -f astropy | |
| sherpa_test | |
| echo "conda create -n test310 --yes -q -c file://$(pwd)/packages python=3.10 astropy sherpa matplotlib" | |
| conda create -n test310 --yes -q -c file://$(pwd)/packages python=3.10 astropy sherpa matplotlib | |
| conda activate test310 | |
| pip install main.zip | |
| sherpa_smoke -f astropy | |
| sherpa_test | |
| echo "conda create -n test311 --yes -q -c file://$(pwd)/packages python=3.11 astropy sherpa matplotlib" | |
| conda create -n test311 --yes -q -c file://$(pwd)/packages python=3.11 astropy sherpa matplotlib | |
| conda activate test311 | |
| pip install main.zip | |
| sherpa_smoke -f astropy | |
| sherpa_test |