Skip to content

Commit

Permalink
Merge pull request #68 from Burke-Lauenroth-Lab/feature_doxygen
Browse files Browse the repository at this point in the history
Feature doxygen setup:
-> update documentation by calling `doxygen Doxyfile`
  • Loading branch information
dschlaep committed Sep 28, 2017
2 parents 9333676 + ac6824a commit bb5e7a4
Show file tree
Hide file tree
Showing 536 changed files with 60,730 additions and 0 deletions.
2,473 changes: 2,473 additions & 0 deletions Doxyfile

Large diffs are not rendered by default.

99 changes: 99 additions & 0 deletions doc/html/_r_e_a_d_m_e_8md.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,99 @@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>SOILWAT2: README.md File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="navtree.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="resize.js"></script>
<script type="text/javascript" src="navtreedata.js"></script>
<script type="text/javascript" src="navtree.js"></script>
<script type="text/javascript">
$(document).ready(initResizable);
</script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">SOILWAT2
&#160;<span id="projectnumber">3.2.7</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
</div><!-- top -->
<div id="side-nav" class="ui-resizable side-nav-resizable">
<div id="nav-tree">
<div id="nav-tree-contents">
<div id="nav-sync" class="sync"></div>
</div>
</div>
<div id="splitbar" style="-moz-user-select:none;"
class="ui-resizable-handle">
</div>
</div>
<script type="text/javascript">
$(document).ready(function(){initNavTree('_r_e_a_d_m_e_8md.html','');});
</script>
<div id="doc-content">
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div class="header">
<div class="headertitle">
<div class="title">README.md File Reference</div> </div>
</div><!--header-->
<div class="contents">
</div><!-- contents -->
</div><!-- doc-content -->
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="_r_e_a_d_m_e_8md.html">README.md</a></li>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
</ul>
</div>
</body>
</html>
243 changes: 243 additions & 0 deletions doc/html/_s_w___control_8c.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,243 @@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>SOILWAT2: SW_Control.c File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="navtree.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="resize.js"></script>
<script type="text/javascript" src="navtreedata.js"></script>
<script type="text/javascript" src="navtree.js"></script>
<script type="text/javascript">
$(document).ready(initResizable);
</script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">SOILWAT2
&#160;<span id="projectnumber">3.2.7</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
</div><!-- top -->
<div id="side-nav" class="ui-resizable side-nav-resizable">
<div id="nav-tree">
<div id="nav-tree-contents">
<div id="nav-sync" class="sync"></div>
</div>
</div>
<div id="splitbar" style="-moz-user-select:none;"
class="ui-resizable-handle">
</div>
</div>
<script type="text/javascript">
$(document).ready(function(){initNavTree('_s_w___control_8c.html','');});
</script>
<div id="doc-content">
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div class="header">
<div class="summary">
<a href="#func-members">Functions</a> &#124;
<a href="#var-members">Variables</a> </div>
<div class="headertitle">
<div class="title">SW_Control.c File Reference</div> </div>
</div><!--header-->
<div class="contents">
<div class="textblock"><code>#include &lt;stdio.h&gt;</code><br />
<code>#include &lt;string.h&gt;</code><br />
<code>#include &lt;stdlib.h&gt;</code><br />
<code>#include &quot;<a class="el" href="generic_8h_source.html">generic.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="filefuncs_8h_source.html">filefuncs.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="rands_8h_source.html">rands.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___defines_8h_source.html">SW_Defines.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___files_8h_source.html">SW_Files.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___control_8h_source.html">SW_Control.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___model_8h_source.html">SW_Model.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___output_8h_source.html">SW_Output.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___site_8h_source.html">SW_Site.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___soil_water_8h_source.html">SW_SoilWater.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___veg_estab_8h_source.html">SW_VegEstab.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___veg_prod_8h_source.html">SW_VegProd.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="_s_w___weather_8h_source.html">SW_Weather.h</a>&quot;</code><br />
</div><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:aff0bb7870fbf9020899035540e606250"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#aff0bb7870fbf9020899035540e606250">SW_FLW_construct</a> (void)</td></tr>
<tr class="separator:aff0bb7870fbf9020899035540e606250"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a943a69d15500659311cb5037d1afae53"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#a943a69d15500659311cb5037d1afae53">SW_CTL_main</a> (void)</td></tr>
<tr class="separator:a943a69d15500659311cb5037d1afae53"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae2909281ecba352303cc710e1c045c54"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#ae2909281ecba352303cc710e1c045c54">SW_CTL_init_model</a> (const char *firstfile)</td></tr>
<tr class="separator:ae2909281ecba352303cc710e1c045c54"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a43102daf9adb8884f1536ddd5267b5d3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#a43102daf9adb8884f1536ddd5267b5d3">SW_CTL_run_current_year</a> (void)</td></tr>
<tr class="separator:a43102daf9adb8884f1536ddd5267b5d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
Variables</h2></td></tr>
<tr class="memitem:a7fe95d8828eeecd4a64b5a230bedea66"><td class="memItemLeft" align="right" valign="top"><a class="el" href="struct_s_w___m_o_d_e_l.html">SW_MODEL</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#a7fe95d8828eeecd4a64b5a230bedea66">SW_Model</a></td></tr>
<tr class="separator:a7fe95d8828eeecd4a64b5a230bedea66"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4b2149c2e1b77da676359b0bc64b1710"><td class="memItemLeft" align="right" valign="top"><a class="el" href="struct_s_w___v_e_g_e_s_t_a_b.html">SW_VEGESTAB</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_s_w___control_8c.html#a4b2149c2e1b77da676359b0bc64b1710">SW_VegEstab</a></td></tr>
<tr class="separator:a4b2149c2e1b77da676359b0bc64b1710"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<h2 class="groupheader">Function Documentation</h2>
<a id="ae2909281ecba352303cc710e1c045c54"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae2909281ecba352303cc710e1c045c54">&#9670;&nbsp;</a></span>SW_CTL_init_model()</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void SW_CTL_init_model </td>
<td>(</td>
<td class="paramtype">const char *&#160;</td>
<td class="paramname"><em>firstfile</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">

</div>
</div>
<a id="a943a69d15500659311cb5037d1afae53"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a943a69d15500659311cb5037d1afae53">&#9670;&nbsp;</a></span>SW_CTL_main()</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void SW_CTL_main </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">

</div>
</div>
<a id="a43102daf9adb8884f1536ddd5267b5d3"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a43102daf9adb8884f1536ddd5267b5d3">&#9670;&nbsp;</a></span>SW_CTL_run_current_year()</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void SW_CTL_run_current_year </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">

<p class="reference">Referenced by <a class="el" href="_s_w___control_8h.html#a943a69d15500659311cb5037d1afae53">SW_CTL_main()</a>.</p>

</div>
</div>
<a id="aff0bb7870fbf9020899035540e606250"></a>
<h2 class="memtitle"><span class="permalink"><a href="#aff0bb7870fbf9020899035540e606250">&#9670;&nbsp;</a></span>SW_FLW_construct()</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void SW_FLW_construct </td>
<td>(</td>
<td class="paramtype">void&#160;</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">

<p class="reference">Referenced by <a class="el" href="_s_w___control_8h.html#ae2909281ecba352303cc710e1c045c54">SW_CTL_init_model()</a>.</p>

</div>
</div>
<h2 class="groupheader">Variable Documentation</h2>
<a id="a7fe95d8828eeecd4a64b5a230bedea66"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a7fe95d8828eeecd4a64b5a230bedea66">&#9670;&nbsp;</a></span>SW_Model</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="struct_s_w___m_o_d_e_l.html">SW_MODEL</a> SW_Model</td>
</tr>
</table>
</div><div class="memdoc">

</div>
</div>
<a id="a4b2149c2e1b77da676359b0bc64b1710"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a4b2149c2e1b77da676359b0bc64b1710">&#9670;&nbsp;</a></span>SW_VegEstab</h2>

<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="struct_s_w___v_e_g_e_s_t_a_b.html">SW_VEGESTAB</a> SW_VegEstab</td>
</tr>
</table>
</div><div class="memdoc">

</div>
</div>
</div><!-- contents -->
</div><!-- doc-content -->
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="_s_w___control_8c.html">SW_Control.c</a></li>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
</ul>
</div>
</body>
</html>
9 changes: 9 additions & 0 deletions doc/html/_s_w___control_8c.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
var _s_w___control_8c =
[
[ "SW_CTL_init_model", "_s_w___control_8c.html#ae2909281ecba352303cc710e1c045c54", null ],
[ "SW_CTL_main", "_s_w___control_8c.html#a943a69d15500659311cb5037d1afae53", null ],
[ "SW_CTL_run_current_year", "_s_w___control_8c.html#a43102daf9adb8884f1536ddd5267b5d3", null ],
[ "SW_FLW_construct", "_s_w___control_8c.html#aff0bb7870fbf9020899035540e606250", null ],
[ "SW_Model", "_s_w___control_8c.html#a7fe95d8828eeecd4a64b5a230bedea66", null ],
[ "SW_VegEstab", "_s_w___control_8c.html#a4b2149c2e1b77da676359b0bc64b1710", null ]
];
Loading

0 comments on commit bb5e7a4

Please sign in to comment.