Re-organize repository with more sub-folders #89
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@CaitlinA What do you think about my suggestion to organize the code? |
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Given the addition of the new documentation and testing files and folders, I think this a great idea! |
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Jul 25, 2019
- addressing #89 (Re-organize repository with more sub-folders)
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…eptions) - fix #266 (comment) - addressing #266 - new script `tools/run_doxygen.sh` - new make targets: "doc" and "doc_clean" - continuous integration: travis-ci will now use the new script which fails on warnings, but disregards exceptions that are documented in the new file `doc/doxygen_exceptions.txt` - currently, there is one known exception, see #267 - moved `Doxyfile` to `doc/` (addressing #89)
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…LWAT2 - address #483 - contribute to DrylandEcology/SOILWAT2#89 --> the subfolder path of SOILWAT2 occurs now consistently on the STEPWAT2 side: 1) makefile variable "path_sw2" 2) in the include header directives (see previous commit) --> if SOILWAT2 changes its file organization, then search/replace of "sw_src" with the new value can now be done Other changes: - since CC is hard-coded to gcc, I defined CXX to g++ so that compilation occurs only within compiler families (and not potentially across, e.g., in case CXX would be defined as clang++) - helper targets to run STEPWAT2 executable in example folder, i.e., `bint_testing_nongridded` and `bint_testing_gridded`, also compiled unit tests, but never run the unit tests --> removed dependency on unit test target --> added a separate make target "run_tests" which compiles and runs the STEPWAT2 unit tests Note: The warning "SW_Main_lib.c:56:6: warning: no previous prototype for function 'usage' [-Wmissing-prototypes]" is fixed with SOILWAT2 commit a44e5688e7799c44b72b017a724ee7ee857531cc (dev-branch enhance_petfunc)
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Use SOILWAT2's makefile to compile a SOILWAT2 library Addressing issue #483 and contribute to DrylandEcology/SOILWAT2#89
This was referenced Jul 29, 2022
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dschlaep
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- addressing #89 - `git mv previous_path target_path` to "rename" folders and files without losing git history - external: googletest and pcg submodules - src: SOILWAT2 source code - include: SOILWAT2 header files - tests/example: example inputs for a SOILWAT2 run, previously "testing" - tests/gtests: unit tests based on googletest, previously "test" - note: additional commits to complete #89 will need to update file path names, makefile, etc.
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dschlaep
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Release v7.0.0 see https://github.com/DrylandEcology/SOILWAT2/milestone/13 - Read daily weather before the simulations enhancement (#311) - Calculate climate variables before simulation loop (#317) - Estimate vegetation cover from climate before simulation run (#318) - Implement multiple soil water retention curves (#315) - Soil density: input either for < 2 mm fraction or for whole soil? enhancement (#280) - Re-organize repository with more sub-folders question (#89) - Daily variables for atmospheric demand (#341) - STEPWAT2 updated to work with this release (see DrylandEcology/STEPWAT2#535) - rSOILWAT2 updated to work with this release (see DrylandEcology/rSOILWAT2#214)
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Currently, all code files, doxygen-file, bib-file, etc. are located at the top-level. I find that navigating is tedious. I suggest that we implement a more hierarchical structure. For instance.
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