@DudLab

DudLab

A lab at the Janelia Research Campus of the Howard Hughes Medical Institute

  • A docker container holding the nanshe workflow and the dependencies needed to run it.

    Python 3 Apache-2.0 Updated Sep 6, 2018
  • Provides a Jupyter workflow for running nanshe.

    Python 2 4 Apache-2.0 Updated Sep 4, 2018
  • A docker container with nanshe and the Jupyter Notebook installed

    Dockerfile 2 Updated Aug 20, 2018
  • For building a docker image on CentOS with miniconda installed.

    Shell 2 Apache-2.0 Updated Aug 16, 2018
  • A repo to build a docker image with the latest working release of nanshe and its dependencies.

    3 Updated Apr 24, 2018
  • For building a docker image on CentOS with Grid Engine, DRMAA, and miniconda installed.

    Shell 2 Apache-2.0 Updated Apr 18, 2018
  • Intel® RealSense™ SDK

    C++ 1,072 Updated Apr 9, 2018
  • An image processing toolkit

    Python 6 BSD-3-Clause Updated Feb 20, 2018
  • Helps install and run the workflow on the Janelia Cluster.

    Shell 2 BSD-3-Clause Updated Feb 15, 2018
  • A simple Dockerfile to mirror the nanshe_workflow container to other Docker registries.

    2 Apache-2.0 Updated Jan 30, 2018
  • A simple python module containing an in-place linear rank filter optimized in C++.

    Python 7 BSD-3-Clause Updated Jan 11, 2018
  • Provides simple strategies for launching jobs.

    Python 2 BSD-3-Clause Updated Jul 10, 2017
  • Example code for the model in http://dx.doi.org/10.1371/journal.pcbi.1000290

    Matlab 1 Updated Mar 27, 2017
  • Helps install and run the workflow on AWS.

    2 Updated Nov 22, 2016
  • datapak

    Forked from bnhwa/datapak

    2015exp

    Matlab 1 Updated Nov 18, 2016
  • runipy

    Forked from paulgb/runipy

    Run IPython notebooks as command-line scripts, generate HTML reports

    Python 89 BSD-2-Clause Updated Sep 20, 2016
  • A prototype for filling out a lab config.

    1 Updated Jul 28, 2016
  • RGB Image processor, denoiser, tracking, for neurons and mrna

    Matlab Updated Jul 18, 2016
  • Converts ns files to HDF5.

    1 Updated Jun 10, 2016
  • Conda-based build system for nanshe and its dependencies.

    Shell 3 Updated Mar 14, 2016
  • Simply pulls in this image ( https://github.com/nanshe-org/docker_nanshe ).

    2 Updated Nov 23, 2015
  • iPython Notebook with slides for demonstrating to a beginner how to use git with examples.

    1 Updated Sep 28, 2015
  • An Event Triggered Recorder

    Python 2 Updated Sep 15, 2015
  • Data acquisition and analysis code for IgorPro

    IGOR Pro 1 Updated May 27, 2015