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A docker container holding the nanshe workflow and the dependencies needed to run it.
Provides a Jupyter workflow for running nanshe.
A docker container with nanshe and the Jupyter Notebook installed
For building a docker image on CentOS with miniconda installed.
A repo to build a docker image with the latest working release of nanshe and its dependencies.
For building a docker image on CentOS with Grid Engine, DRMAA, and miniconda installed.
Intel® RealSense™ SDK
An image processing toolkit
Helps install and run the workflow on the Janelia Cluster.
A simple Dockerfile to mirror the nanshe_workflow container to other Docker registries.
A simple python module containing an in-place linear rank filter optimized in C++.
Provides simple strategies for launching jobs.
Example code for the model in http://dx.doi.org/10.1371/journal.pcbi.1000290
Helps install and run the workflow on AWS.
Run IPython notebooks as command-line scripts, generate HTML reports
A prototype for filling out a lab config.
RGB Image processor, denoiser, tracking, for neurons and mrna
Converts ns files to HDF5.
Conda-based build system for nanshe and its dependencies.
Simply pulls in this image ( https://github.com/nanshe-org/docker_nanshe ).
iPython Notebook with slides for demonstrating to a beginner how to use git with examples.
An Event Triggered Recorder
Data acquisition and analysis code for IgorPro